Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_B11
         (851 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46460.1 68418.m05722 pentatricopeptide (PPR) repeat-containi...    30   2.2  
At5g54670.1 68418.m06807 kinesin-like protein C (KATC)                 29   3.0  
At2g42570.1 68415.m05268 expressed protein                             29   3.0  
At1g17540.1 68414.m02157 protein kinase-related similar to serin...    29   3.0  
At4g37180.2 68417.m05264 myb family transcription factor contain...    29   5.2  
At4g37180.1 68417.m05263 myb family transcription factor contain...    29   5.2  
At4g00170.1 68417.m00018 vesicle-associated membrane family prot...    28   6.9  
At1g65130.1 68414.m07384 ubiquitin carboxyl-terminal hydrolase-r...    28   6.9  
At1g52570.1 68414.m05935 phospholipase D alpha 2 / PLD alpha 2 (...    28   6.9  
At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin...    28   9.1  

>At5g46460.1 68418.m05722 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 697

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/68 (25%), Positives = 31/68 (45%)
 Frame = +2

Query: 353 NLTAMPEKFWKNSIIEKPTDREIVCHASAWDFFDGEDFRIKQCTTVDYEYFQTTHHEMGH 532
           N++ +  K  KN I++KP    +V      +FF G+      C+ + YE  +    ++  
Sbjct: 548 NVSKLRVKMKKNGIMKKPGSSWVVIRGKKHEFFSGDQ---PHCSRI-YEKLEFLREKLKE 603

Query: 533 IQYYLQYR 556
           + Y   YR
Sbjct: 604 LGYAPDYR 611


>At5g54670.1 68418.m06807 kinesin-like protein C (KATC)
          Length = 754

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +2

Query: 602 EAVGDTIALSVSSPKH---LRRVGLATGDAEDEQTEIXQLYKMGIDKIAFLPFAYXWTCS 772
           EA+G  I L  ++ KH     +V   T   ED  TEI QL +  +D      FAY  T S
Sbjct: 426 EALGRGIDLMQNAQKHAFTFDKVFAPTASQEDVFTEISQLVQSALDGYKVCIFAYGQTGS 485


>At2g42570.1 68415.m05268 expressed protein
          Length = 367

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
 Frame = +1

Query: 16  NVAEWW-QSEYEVP-DFEEQLAKLWEDVKPL---YQQLHAYVR--KRLRDKYGDKVVSAR 174
           N   WW  +E+  P D+ E   +L++D+  L   Y+ +  + R      D    KV    
Sbjct: 204 NSWHWWTHTEHIQPWDYMEDGNRLYKDMNRLVAFYKGMTTWARWVNAYVDPSKTKVFF-N 262

Query: 175 GPIPAHLLGNMWAQTWNNIESFTRPYPDKK 264
           G  P H  G  W +  N+  S T+P+  +K
Sbjct: 263 GVSPTHYEGKDWGEPMNSCRSQTQPFYGRK 292


>At1g17540.1 68414.m02157 protein kinase-related similar to
           serine/threonine protein kinase Fen [Lycopersicon
           esculentum] GI:1809259
          Length = 733

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
 Frame = +1

Query: 505 PDHPPRDGAHPVLPAVPG---STRCVQGRSEP 591
           P HPP    HP + + PG   ST    GRS P
Sbjct: 178 PQHPPHPSKHPSMMSDPGPTSSTSSESGRSSP 209


>At4g37180.2 68417.m05264 myb family transcription factor contains
           Pfam domain, PF00249: Myb-like DNA-binding domain
          Length = 363

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
 Frame = +2

Query: 488 VDYEYFQTTHH-----EMGHIQYYLQYRDQPVVFRDGANQGFHEAVGDTIALSVSSPKHL 652
           +DY   + +HH     +     +++Q ++Q   +    ++ F +A+       V++PK +
Sbjct: 189 MDYSRIEQSHHHHQFNKPSSQSHHIQKKEQRRRWSQELHRKFVDALHRLGGPQVATPKQI 248

Query: 653 RRVGLATGDAEDEQTEIXQLYKMGIDKIAFLPFAYXWTCSDTGVSXRKT 799
           R +    G   DE     Q Y+M I K    P     +    GV  R++
Sbjct: 249 RDLMKVDGLTNDEVKSHLQKYRMHIRKHPLHPTKTLSSSDQPGVLERES 297


>At4g37180.1 68417.m05263 myb family transcription factor contains
           Pfam domain, PF00249: Myb-like DNA-binding domain
          Length = 356

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
 Frame = +2

Query: 488 VDYEYFQTTHH-----EMGHIQYYLQYRDQPVVFRDGANQGFHEAVGDTIALSVSSPKHL 652
           +DY   + +HH     +     +++Q ++Q   +    ++ F +A+       V++PK +
Sbjct: 182 MDYSRIEQSHHHHQFNKPSSQSHHIQKKEQRRRWSQELHRKFVDALHRLGGPQVATPKQI 241

Query: 653 RRVGLATGDAEDEQTEIXQLYKMGIDKIAFLPFAYXWTCSDTGVSXRKT 799
           R +    G   DE     Q Y+M I K    P     +    GV  R++
Sbjct: 242 RDLMKVDGLTNDEVKSHLQKYRMHIRKHPLHPTKTLSSSDQPGVLERES 290


>At4g00170.1 68417.m00018 vesicle-associated membrane family protein
           / VAMP family protein similar to VAP27 GI:6688926
           [Nicotiana plumbaginifolia]
          Length = 239

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +1

Query: 271 DVTQAMRDQNYTPMKMFQMSDEFFX---VVELDRYAREVLEELYNREA 405
           +VT  M+ Q   P+ M Q  D+F     VV     ++EVL E++N+EA
Sbjct: 67  NVTVTMQAQKEAPLDM-QCKDKFLVQTVVVSDGTTSKEVLAEMFNKEA 113


>At1g65130.1 68414.m07384 ubiquitin carboxyl-terminal
            hydrolase-related contains Pfam profiles PF00443:
            Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
            of unknown function (DUF629), PF04781: Protein of unknown
            function (DUF627)
          Length = 1086

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 10   FDNVAEWWQSEYEVPDFEEQLAKLWE-DVKPLYQQLHAYVRKRL 138
            F  V EW ++E E+  +E   A  WE D+  LY+ L      RL
Sbjct: 975  FTIVLEWEKNETEIEIYETTNALHWEIDISRLYEGLEPNTNYRL 1018


>At1g52570.1 68414.m05935 phospholipase D alpha 2 / PLD alpha 2
           (PLDALPHA2) (PLD2) / choline phosphatase 2 identical to
           phospholipase D alpha 2 ( PLD alpha 2) SP:Q9SSQ9 from
           [Arabidopsis thaliana]
          Length = 810

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 22/85 (25%), Positives = 34/85 (40%)
 Frame = +1

Query: 94  KPLYQQLHAYVRKRLRDKYGDKVVSARGPIPAHLLGNMWAQTWNNIESFTRPYPDKKEID 273
           K   + ++  V K LR+  G +    R  +    LGN   +     E   +P PD   I 
Sbjct: 591 KRTMEMMYKDVIKALREN-GLEGEDPRDYLTFFCLGNREVKKDGEYEPSEKPEPDTDYIR 649

Query: 274 VTQAMRDQNYTPMKMFQMSDEFFXV 348
             +A R   Y   KM  + DE+  +
Sbjct: 650 AQEARRFMIYVHTKMMIVDDEYIII 674


>At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin
           motor protein - Ustilago maydis, PID:g2062750; identical
           to cDNA   MKRP2 mRNA for kinesin-related protein
           GI:16902293, kinesin-related protein [Arabidopsis
           thaliana] GI:16902294
          Length = 1055

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 477 SARQSITNTSRPPTTRWGTSSTTCSTGINPLCSGTERTKVSTKRSG 614
           ++  S T +SRPP+    TSS+  S  + P  + T  + + T  +G
Sbjct: 2   ASSSSRTRSSRPPSPASSTSSSHLSNRLIPRSNSTSASSLITSAAG 47


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,869,006
Number of Sequences: 28952
Number of extensions: 381213
Number of successful extensions: 1186
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)