Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_B07
(830 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433... 196 2e-50
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995... 186 1e-47
04_01_0528 - 6917414-6919849 30 2.0
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 30 2.6
08_01_0384 + 3414291-3414508,3414509-3414755,3415864-3416013,341... 29 4.5
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854... 29 4.5
>09_02_0105 -
4337047-4337079,4337175-4337242,4337323-4337425,
4337507-4337737,4339307-4339347,4339437-4339473,
4339603-4339605
Length = 171
Score = 196 bits (478), Expect = 2e-50
Identities = 95/139 (68%), Positives = 111/139 (79%), Gaps = 1/139 (0%)
Frame = +3
Query: 6 LRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAK-QFGTTQ 182
LRVHFKNT ETA AIRK+PL +A RYL++VI K+ IPFRR+ GGVGR AQAK + Q
Sbjct: 22 LRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQ 81
Query: 183 GRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYM 362
GRWP KSA F+L LL+NAESNA+ K LDVD L + HIQVN+A RRRTYRAHGRINPYM
Sbjct: 82 GRWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQVNQAQKQRRRTYRAHGRINPYM 141
Query: 363 SSPCHIEVCLSEREDAVAR 419
SSPCHIE+ LSE+E+ V +
Sbjct: 142 SSPCHIELILSEKEEPVKK 160
>08_02_1361 -
26398987-26399019,26399320-26399387,26399458-26399560,
26399658-26399888,26400791-26400826,26400891-26400931,
26401028-26401064,26401158-26401160
Length = 183
Score = 186 bits (454), Expect = 1e-47
Identities = 91/141 (64%), Positives = 108/141 (76%), Gaps = 1/141 (0%)
Frame = +3
Query: 24 NTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTT-QGRWPKK 200
NT ETA A+RK+PL +A RYL++VI K+ IPFRR+ GGVGR AQ K + QGRWP K
Sbjct: 40 NTRETAFALRKLPLVKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQVKSRQSNGQGRWPAK 99
Query: 201 SAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHI 380
SA F+L LL+NAESNAD K LDVD L + HIQVN+A RRRTYRAHGRINPYMSSPCH+
Sbjct: 100 SARFILDLLKNAESNADVKGLDVDNLFVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHV 159
Query: 381 EVCLSEREDAVARVAPTDDAP 443
E+ LSE+E+AV + T AP
Sbjct: 160 ELILSEKEEAVKKEPETTIAP 180
>04_01_0528 - 6917414-6919849
Length = 811
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 558 GHMCSSCRSRPL*SIPRGAQAYAYQLS-CTKWSYSESYYKLGTGRRFKTS*LGNCXLGIF 734
G+M SS ++ L +PR + + S +KW + Y+ LG+ F +S L N L
Sbjct: 421 GNMDSSLQATVLLKVPRSTNSPSMISSGSSKWKKDKKYWILGSSLFFGSSVLVNFLLIFV 480
Query: 735 VKXPYFCGVT 764
+ +C +T
Sbjct: 481 LLFGTYCSIT 490
>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +3
Query: 123 RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAE--SNADNKTLDVDRLVIDHIQ 296
R +G V RC R K EF Q+ + +E S + + L + + I H+
Sbjct: 1011 RNLSGRVRRCRMHDIIRLLALR--KSKEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLS 1068
Query: 297 VNRAPCLR 320
+ APCLR
Sbjct: 1069 GSSAPCLR 1076
>08_01_0384 +
3414291-3414508,3414509-3414755,3415864-3416013,
3416419-3416476,3416556-3416648,3416775-3416807,
3417357-3417448,3417544-3417603,3417729-3417995
Length = 405
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1
Query: 632 LVRVSLGPSRDTLERPRPAARAHVA 558
L+R S+GP+R L RPRP H A
Sbjct: 4 LLRRSVGPARQLLLRPRPLPLPHAA 28
>02_05_1273 +
35381626-35382486,35382567-35382691,35384851-35385450,
35385550-35385841,35386199-35386364,35386664-35386707,
35386866-35386979,35387171-35387290,35387541-35387626,
35388340-35388502
Length = 856
Score = 29.1 bits (62), Expect = 4.5
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +3
Query: 84 LKNVIEKKECIPFRRFNGGVGRCAQAKQ--FGTTQGRWPKKSAEFLLQLLRNAESNAD-- 251
L N++E E R GR A+ Q + RWP ++AE RN E NA+
Sbjct: 400 LDNMVEMHETQVDNRLQDEAGRDARFWQPSLDDSLDRWPNETAE---DAERNWEDNAEEL 456
Query: 252 -NKTLDVDRLVIDHIQ 296
++T++ D DH+Q
Sbjct: 457 HSETMEDDAREHDHLQ 472
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,105,452
Number of Sequences: 37544
Number of extensions: 394092
Number of successful extensions: 1022
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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