Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_B07
         (830 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.86 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   6.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   6.0  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.0 bits (52), Expect = 0.86
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -1

Query: 116 NTLFLFNHVFEVTNSTTERHLSDCHCGLICVLKV 15
           N  FL + +F+         LSD   GL C + V
Sbjct: 312 NARFLMDSMFDFAERVNSLRLSDAELGLFCSVVV 345


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 577 QLEHMWPXXXXXFDCINLLFNPYV 506
           +L H  P     +DC+ LLF+  V
Sbjct: 395 ELRHSRPVPAKKYDCVTLLFSGIV 418


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 577 QLEHMWPXXXXXFDCINLLFNPYV 506
           +L H  P     +DC+ LLF+  V
Sbjct: 395 ELRHSRPVPAKKYDCVTLLFSGIV 418


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,913
Number of Sequences: 438
Number of extensions: 3981
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)