Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_B07
         (830 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) simi...   192   3e-49
At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) simi...   190   7e-49
At3g15530.2 68416.m01969 expressed protein                             29   2.9  
At3g15530.1 68416.m01968 expressed protein                             29   2.9  
At5g66270.1 68418.m08356 zinc finger (CCCH-type) family protein ...    28   6.6  
At5g18420.1 68418.m02168 expressed protein non-consensus GC dono...    28   6.6  

>At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) similar
           to GB:P51413 from [Arabidopsis thaliana]; similar to
           ESTs gb|L33542 and gb|AA660016
          Length = 176

 Score =  192 bits (467), Expect = 3e-49
 Identities = 95/143 (66%), Positives = 111/143 (77%), Gaps = 1/143 (0%)
 Frame = +3

Query: 6   LRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAK-QFGTTQ 182
           LRVHFKNT ETA AIRK+PL +A RYL++VI  K+ IPF RF  GVGR AQAK +    Q
Sbjct: 22  LRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQ 81

Query: 183 GRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYM 362
           GRWP KSA+F+L LL+NAESNA+ K LDVD L I HIQVN+A   RRRTYRAHGRINPYM
Sbjct: 82  GRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYM 141

Query: 363 SSPCHIEVCLSEREDAVARVAPT 431
           S+PCHIE+ LSE+E+ V +   T
Sbjct: 142 SNPCHIELILSEKEEPVKKEPET 164


>At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) similar
           to ribosomal protein GI:19101 from [Hordeum vulgare]
          Length = 175

 Score =  190 bits (464), Expect = 7e-49
 Identities = 95/143 (66%), Positives = 111/143 (77%), Gaps = 1/143 (0%)
 Frame = +3

Query: 6   LRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAK-QFGTTQ 182
           LRVHFKNT ETA AIRK+PL +A RYL++VI  K+ IPF RF  GVGR AQAK +    Q
Sbjct: 22  LRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQ 81

Query: 183 GRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYM 362
           GRWP KSA+F+L LL+NAESNA+ K LDVD L I HIQVN+A   RRRTYRAHGRINPYM
Sbjct: 82  GRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYM 141

Query: 363 SSPCHIEVCLSEREDAVARVAPT 431
           S+PCHIE+ LSE+E+ V +   T
Sbjct: 142 SNPCHIELILSEKEEPVKKEPET 164


>At3g15530.2 68416.m01969 expressed protein
          Length = 288

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
 Frame = -2

Query: 526 LLFNPYVYSLI----IFSF*RASFFLESFFFAGASSVGA 422
           LLF+ + +SL+    +  F +  FFL+SFF +GA+ + A
Sbjct: 28  LLFHAFFFSLLSLLFLIYFDQICFFLDSFFLSGAARLAA 66


>At3g15530.1 68416.m01968 expressed protein
          Length = 288

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
 Frame = -2

Query: 526 LLFNPYVYSLI----IFSF*RASFFLESFFFAGASSVGA 422
           LLF+ + +SL+    +  F +  FFL+SFF +GA+ + A
Sbjct: 28  LLFHAFFFSLLSLLFLIYFDQICFFLDSFFLSGAARLAA 66


>At5g66270.1 68418.m08356 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 449

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 204 RISWASDPVLCQTALLEHSD 145
           R+SWASD +LCQ  L    D
Sbjct: 9   RVSWASDSMLCQVKLFLSDD 28


>At5g18420.1 68418.m02168 expressed protein non-consensus GC donor
           splice site at exon 1, unknown (C40) protein, Homo
           sapiens, EMBL:AF103798
          Length = 441

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 2/102 (1%)
 Frame = +3

Query: 24  NTYETAMAIRKMPLR--RAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQGRWPK 197
           N Y  A+    M L     V  L   +E  +          +  C  AKQ    Q R  +
Sbjct: 333 NDYYEALGNMDMSLHSMEVVNRLTTAVELPKDFIRMYITNCISSCENAKQDKYMQNRLVR 392

Query: 198 KSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRR 323
               FL  L+RN   N  +  ++V    I+  +V  A  L R
Sbjct: 393 LVCVFLQSLIRNKIINVKDLFIEVQAFCIEFSRVREAAGLFR 434


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,576,778
Number of Sequences: 28952
Number of extensions: 298357
Number of successful extensions: 719
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)