Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A24
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    30   0.48 
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    28   1.5  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    26   7.8  
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po...    26   7.8  

>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 39/156 (25%), Positives = 63/156 (40%), Gaps = 7/156 (4%)
 Frame = +3

Query: 51   HSTNPYHNSIHATDVTQAMHCFLLQGSIRAFIRPVEIIACLLSAIAHDI-FHPGVNQGF- 224
            H     ++++H +D    +H FL+QG     +     I C+L   A      P +  G  
Sbjct: 1279 HYIESNNSAMHISDCLILLHEFLVQGYQGVDMHTYHNIICILIEKAEKCKDEPVILAGIE 1338

Query: 225  -LIATCNHLADLYRILEGTSENFSVL--ESHHWRAALSCIIESGLLEERPDLQ-EELKKH 392
              I     +ADL  + E T +    L  E+    A L  ++ S +L    DL+  E K  
Sbjct: 1339 DNITLIAEIADLQGLYEFTQQRLQSLNTETGEKSAPLLLMLLSAILMRLKDLEFLETKDL 1398

Query: 393  LK-VLIMATDITRQHDYLSRFKKLLDTNTLDMRIQE 497
            L+ V++   D T      + F   L  NT+   + E
Sbjct: 1399 LRHVVLKYIDHTNPEIRKATFNVCLAVNTIVNNVDE 1434


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -2

Query: 250 ARWLQVAIRKP*LTPG*KISCAIADSKHAIISTGRMNALIEPC 122
           A+W+++ ++ P  TP   I+ A   + H ++  G +   +E C
Sbjct: 344 AQWVELILQNPDPTPAIHIARACLLAVHGVVDLGDLQMKVEKC 386


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 20/75 (26%), Positives = 33/75 (44%)
 Frame = +3

Query: 81  HATDVTQAMHCFLLQGSIRAFIRPVEIIACLLSAIAHDIFHPGVNQGFLIATCNHLADLY 260
           H  ++ + +  FL   S+     P E +  LL  I   + +   N   L+   + L DL+
Sbjct: 438 HWLELWRVLFSFLDFVSVLINTSPTEDVTRLLELILDVLAYIISNGDALVIRSDELVDLF 497

Query: 261 RILEGTSENFSVLES 305
             L  +S+NFS   S
Sbjct: 498 YKLLHSSKNFSSFSS 512


>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 371 PRRVEETFKSVNHGDRHHTPARLFKS 448
           PRRV  T +S      +H P R+F+S
Sbjct: 56  PRRVSRTLRSSESVHTNHGPERVFES 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,369,655
Number of Sequences: 5004
Number of extensions: 68417
Number of successful extensions: 194
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)