Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A23
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...   221   1e-58
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    57   4e-09
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    41   3e-04
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    27   2.5  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    26   7.6  

>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score =  221 bits (539), Expect = 1e-58
 Identities = 105/148 (70%), Positives = 124/148 (83%)
 Frame = +1

Query: 217 PPSSXERILGAAPKADLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNLEP 396
           P    ERI GA  +A + E+GRVLSIGDGIAR+ GL N+QAEE+VEFSSG+KGMALNLE 
Sbjct: 37  PSILEERIRGAYNQAQMMESGRVLSIGDGIARISGLSNVQAEELVEFSSGIKGMALNLEA 96

Query: 397 DNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMR 576
           D VG V+FGND+L++EG++VKRT  IVDVPVGE +LGRVVDALGNPIDGKGPI T  R R
Sbjct: 97  DTVGCVLFGNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGPIKTTERRR 156

Query: 577 VGIKAPGIIPRVSVREPMQTGIKAVDSL 660
           V +KAPGI+PR SV EPMQTG+KA+DS+
Sbjct: 157 VQLKAPGILPRTSVCEPMQTGLKAIDSM 184



 Score = 52.0 bits (119), Expect = 1e-07
 Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
 Frame = +2

Query: 587 RRQVSFPGCLC-VSLCRLVS---RLLTLWXPXGRGQRELIXGDRQTGXTALAIDTIIXXQ 754
           R Q+  PG L   S+C  +    + +    P GRGQRELI GDRQTG TA+A+DTI+  +
Sbjct: 156 RVQLKAPGILPRTSVCEPMQTGLKAIDSMVPIGRGQRELIIGDRQTGKTAIALDTILNHK 215

Query: 755 R-SXRVRMKKKIVLHLCCHXTKKXXVXQIV 841
           R +      KK+         K+  V Q+V
Sbjct: 216 RWNNSSDESKKLYCVYVAVGQKRSTVAQLV 245


>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 56.8 bits (131), Expect = 4e-09
 Identities = 28/84 (33%), Positives = 47/84 (55%)
 Frame = +1

Query: 409 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIK 588
           + + G + L++ G  V  TG+ + +PVG   LGR+++ +G P+D +GPI       +   
Sbjct: 108 IAMDGTEGLVR-GTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHAD 166

Query: 589 APGIIPRVSVREPMQTGIKAVDSL 660
           AP    + +  E ++TGIK VD L
Sbjct: 167 APSFEEQSTTPEILETGIKVVDLL 190


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
 Frame = +1

Query: 463 TGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIKAPGIIP--RVSVREPMQT 636
           TG  + +PV E +LGRV +  G PID KGP +  +   + I    I P  R+   E +QT
Sbjct: 92  TGHSMRIPVSEDMLGRVFNGSGLPID-KGP-NLLAEDYLDINGSPINPYARIYPEEMIQT 149

Query: 637 GIKAVDSL 660
           GI ++D L
Sbjct: 150 GISSIDGL 157


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 672 PXGXQRVNSLDTSLHRLTHRHPGNDT 595
           P   QR++SLD+S       HPGN T
Sbjct: 168 PNKVQRLSSLDSSQDSFQEEHPGNVT 193


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -1

Query: 349 PSPQPGCSSSHKHERYHHQCSRH-DQSLLDQPWAR 248
           P P  G    HK  ++   CS H D S+ ++P A+
Sbjct: 405 PVPHNGTKPDHKPWKHEEHCSCHEDHSVHERPSAK 439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,211,839
Number of Sequences: 5004
Number of extensions: 63252
Number of successful extensions: 177
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)