Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_A23
(841 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.) 168 4e-42
SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0) 66 4e-11
SB_13852| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_14021| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_1374| Best HMM Match : PAN (HMM E-Value=0.013) 29 4.7
SB_41865| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_9053| Best HMM Match : TIG (HMM E-Value=0) 29 6.2
SB_53572| Best HMM Match : efhand (HMM E-Value=0.0053) 29 6.2
SB_49877| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38) 28 8.2
SB_18911| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 390
Score = 168 bits (409), Expect = 4e-42
Identities = 82/95 (86%), Positives = 88/95 (92%)
Frame = +1
Query: 376 MALNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPI 555
MALNLEPDNVGVVVFGND+LIKEGDIVKRTGAIVDVPVGE++LGRVVDALGNPIDGKGP
Sbjct: 1 MALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNPIDGKGPT 60
Query: 556 DTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVDSL 660
+R RVG+KAPGIIPR SV+EPM TGIKAVDSL
Sbjct: 61 G-GTRARVGVKAPGIIPRTSVKEPMLTGIKAVDSL 94
Score = 52.0 bits (119), Expect = 6e-07
Identities = 24/31 (77%), Positives = 26/31 (83%)
Frame = +2
Query: 665 PXGRGQRELIXGDRQTGXTALAIDTIIXXQR 757
P GRGQRELI GDRQTG TA+AIDTII +R
Sbjct: 96 PIGRGQRELIIGDRQTGKTAIAIDTIINQKR 126
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3
Query: 777 KKKLYCIYVAXGQK 818
+KKLYCIYVA GQK
Sbjct: 145 EKKLYCIYVAIGQK 158
>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
Length = 448
Score = 65.7 bits (153), Expect = 4e-11
Identities = 30/84 (35%), Positives = 51/84 (60%)
Frame = +1
Query: 409 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIK 588
+ + G + LI+ G TG + +PVG + LGR+++ +G PID +GP++T R + +
Sbjct: 124 IAMDGTEGLIR-GQKCVDTGGPITIPVGPETLGRIINVIGEPIDERGPVETDKRAAIHAE 182
Query: 589 APGIIPRVSVREPMQTGIKAVDSL 660
AP + + +E ++TGIK VD L
Sbjct: 183 APEFVEMSTEQEILETGIKVVDLL 206
>SB_13852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 846
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +1
Query: 181 YMSQPPTKLPRSPPSSXERILGAAPKADLE--ETGRVLS 291
Y+S P T + S PS+ +R++ A +A L TGRV S
Sbjct: 706 YVSSPGTNMSESTPSAGQRLVSGAAEAALNALRTGRVTS 744
>SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1659
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -2
Query: 501 DLLSDGNVYDSTSTLDNISFLDKLVITKYYHTHIVRF 391
D LSDG+ ++T N F+D+++ + HT+I RF
Sbjct: 1175 DALSDGS---KSNTSGNYGFMDQIMALSWIHTNIARF 1208
>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1396
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 139 QRWRCPQWPWHLANYMSQPPTKLP-RSPPSSXERILGAAPKADLEETGRV 285
Q W Q PW + ++ P K P +SPP S E+I +A+ + R+
Sbjct: 547 QAWVQEQVPWKVTRKTTKSPRKSPNKSPPRSPEKIKQDKEEAENQRQKRL 596
>SB_14021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/18 (66%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = -1
Query: 313 HERY-HHQCSRHDQSLLD 263
HERY HHQ +RHD LD
Sbjct: 157 HERYQHHQTTRHDDQTLD 174
>SB_1374| Best HMM Match : PAN (HMM E-Value=0.013)
Length = 498
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +1
Query: 145 WRCPQWPWHLANYMSQPPTKLPRSPPSSXERILGAAPKADLE 270
WR P W W L + + L RSP S + I P D+E
Sbjct: 14 WR-PSWKWSLVPNVLEYHRSLARSPQSLSDHIEKRQPLIDME 54
>SB_41865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 28.7 bits (61), Expect = 6.2
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 104 YRASNTSGDQRHFSQTYNCGRRKASYSARDSLR 6
+ N+S +Q HFS + KASY++ ++ R
Sbjct: 36 FNTCNSSSNQEHFSLGFTTSPEKASYTSNETKR 68
>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
Length = 2990
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -2
Query: 432 LVITKYYHTHIVRFQVKGHSLEA*GELHHLLSLDVLQAINTSDTITNAQDTTSLF 268
L +T Y T +V F K H+ +L L+ D L + + ITN T +F
Sbjct: 2403 LSVTNQYGTELVPFHEKDHTHPLGHQLSLLMKEDYLMSYVGGEQITNISYTGKIF 2457
>SB_53572| Best HMM Match : efhand (HMM E-Value=0.0053)
Length = 263
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 498 DPWACSRCFG*PY*WQGTNRHEIPYEGRY 584
D ACSR G W G++ +EIPY G +
Sbjct: 83 DTSACSRIAGNTGYWDGSDTNEIPYFGAW 111
>SB_49877| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 607
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 493 EQILGRVVDALGNPIDGKGPIDTKSRMRVGIKAPG 597
E ILGR+ + NP+ G+G T S ++ I A G
Sbjct: 211 ETILGRLPSFMENPLAGEGEFSTHSMLKDDIYAIG 245
>SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)
Length = 1301
Score = 28.3 bits (60), Expect = 8.2
Identities = 29/80 (36%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Frame = +1
Query: 187 SQP---PTKLPRSPPSSXERILGAAPKADLEETGRVLSIGDGIARVYGLKNIQAEEMVEF 357
SQP PT PP GA PK+ LEE G G V + AE+ + F
Sbjct: 1020 SQPQERPTSFKSWPPPQLAPGGGAQPKSFLEELFNGAPPG-GKEPVGPEDDKPAEQRMSF 1078
Query: 358 SSGLKGMALNLEPDNVGVVV 417
+S LK MA N E G V
Sbjct: 1079 TSLLKEMAPNRESPKKGSFV 1098
>SB_18911| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 28.3 bits (60), Expect = 8.2
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -1
Query: 346 SPQPGCSSSHKHERYHHQCSRH 281
SP P SS H H R H+ C H
Sbjct: 61 SPLPLSSSHHHHHRRHYLCHHH 82
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,386,156
Number of Sequences: 59808
Number of extensions: 541173
Number of successful extensions: 1764
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1753
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -