Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A21
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    29   0.78 
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    28   1.8  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    27   3.2  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   4.2  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    26   5.5  
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    26   5.5  

>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 29.1 bits (62), Expect = 0.78
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -2

Query: 471 SSRRYRGRVSRLYTEQAPSLPPQQF 397
           + R  RG+V RLYTE+A SL  ++F
Sbjct: 354 AGRTMRGKVFRLYTEKAYSLMKEEF 378


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 201 SLHRYLRNYVLHKIL--CHRCPFCLVSSLRLPSVCLSPPW 88
           SL     N V H +L  C +     +SS ++P VC+SP W
Sbjct: 194 SLQMTEENPVSHAVLYDCSQETLKKISSAQVPIVCVSPKW 233


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 15/60 (25%), Positives = 25/60 (41%)
 Frame = +1

Query: 424 LFRIQSRNTSPIPSRRKYPMR*KCPYLSPTPSKRKFPLPSRNTSNTQYTYLNLTPLKGKY 603
           + R  +++TSPIP+R  Y        L+ T    +         N  Y  L+ T   G++
Sbjct: 605 IMRTSTKSTSPIPARPFYAQSGSLQSLNTTQHSHQISGGHSGRMNVPYAKLSYTSHNGRH 664


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 114 PSVCLSPPWQRQPRPTMPPK*PCTSLWXPNDA 19
           P   L PP    PRP++PP  P ++   P+ A
Sbjct: 133 PQSELRPPTSAPPRPSIPPPSPASAPPIPSKA 164


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 692 VRDFLLNGVGSGHFDFDFV 636
           VR  + NG G G FDF FV
Sbjct: 557 VRFVVANGAGKGGFDFSFV 575


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 496 PYLSPTPSKRKFPLPSRNTSNTQY 567
           P++SP+P   K  +PS N  N+ +
Sbjct: 212 PFVSPSPISMKMDMPSLNDRNSSH 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,461,950
Number of Sequences: 5004
Number of extensions: 47945
Number of successful extensions: 138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)