Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A20
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.1  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    27   2.5  
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    27   3.3  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.3  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    26   5.8  
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    26   5.8  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -3

Query: 467 PPRVEPPRSNYTFAGAPFPPRAEVATPP 384
           PP   PPRSN      P PP+   A PP
Sbjct: 337 PPPPPPPRSNAA-GSIPLPPQGRSAPPP 363


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 962

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 17   ENTRTIDVVTLQTDELYF*VK--LVSLRIKKKPFIVLIFHVW 136
            EN++TID  TLQ  +L   +K  +  LR+   PF V   + W
Sbjct: 886  ENSKTIDEATLQLTDLIQAIKTGIYYLRMFNLPFHVKQLYTW 927


>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +1

Query: 283 GRSEDTAPSPSRRRACSPGRHPGTWR-RRRSLPITGGVATSALGGKGAPAKV*FERGGST 459
           G+  D  P PS  R C    H G+ +   +   +TGG +     G G  A V F R GS 
Sbjct: 14  GKHADLDPEPSLLRYCDGRVHVGSGKLAEKKTLLTGGDS-----GIGKAAAVMFAREGSD 68

Query: 460 LGGPC 474
           L   C
Sbjct: 69  LVISC 73


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
 Frame = -3

Query: 452 PPRSNYTFAGAPFP-------PRAEVATPPVIGSERLRLQVPGWRPGEQARRLEGDGAVS 294
           PP SNY  A  P+        P++  A PP   S R R+  P + PG    +    G   
Sbjct: 98  PPSSNYNTAKPPYQTSQFYARPQSSYAPPP---SGRPRISYP-YPPGYMCYKCHNTGYKD 153

Query: 293 SDRP 282
           S RP
Sbjct: 154 SGRP 157


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -3

Query: 557 PVRENRADRLDGSEAGRRVCQAARPRLQHGPPRVEPPRSNYTFAGAPFPP 408
           P+ +++ D  D         Q   P++Q    R EP  SN+  +  PFPP
Sbjct: 117 PLSDSQLDTGDSPATSETTVQDYNPQVQ-SYCRPEPLSSNHVRSCPPFPP 165


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 103 KTFHCFNFSCLAGDYNDKKLVKQP 174
           KTF+ F  + L G YN++K  + P
Sbjct: 110 KTFYKFTIAQLGGSYNEEKYYQPP 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,533,539
Number of Sequences: 5004
Number of extensions: 46565
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)