Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_A20
(844 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z50797-1|CAA90671.1| 206|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical pr... 29 5.5
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 5.5
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 5.5
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 5.5
Z81094-5|CAB03149.2| 675|Caenorhabditis elegans Hypothetical pr... 28 7.2
AF536544-1|AAN77185.1| 675|Caenorhabditis elegans SR-related CT... 28 7.2
AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical... 28 7.2
AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical... 28 7.2
AF000263-10|AAM22070.1| 163|Caenorhabditis elegans Hypothetical... 28 7.2
AF000263-9|AAO21391.2| 184|Caenorhabditis elegans Hypothetical ... 28 7.2
AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical ... 28 7.2
AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical ... 28 7.2
Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical pr... 28 9.5
U40800-4|AAO91742.1| 763|Caenorhabditis elegans Hypothetical pr... 28 9.5
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +1
Query: 271 RSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRRS 372
R R S+ +P+P RRR SP + P RRRRS
Sbjct: 438 RRRRSPSQSKSPAPRRRR--SPSKSPQAPRRRRS 469
>Z50797-1|CAA90671.1| 206|Caenorhabditis elegans Hypothetical
protein T22H6.1 protein.
Length = 206
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Frame = -3
Query: 365 LRLQVPGWRPGEQARRLEGD------GAVSSDRPDRDRALRTSQRRCKSHYPMTY 219
LRLQV G + GEQ + G +S++ P RDRAL CK Y + Y
Sbjct: 77 LRLQVKGLKHGEQITKSSGKCNSKKLDTISAETPLRDRAL------CKFEYVLNY 125
>Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical
protein C27B7.7 protein.
Length = 1471
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 405 SRGEGRPSEGVVRARRLHSRRSVLEAWSRRLADPSAGL 518
+RG+ RPS V + R ++ + ++ WSR A SAG+
Sbjct: 469 ARGKPRPSISVAISDRKNASQVEVDVWSRLQATSSAGI 506
>Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical
protein F25H8.5c protein.
Length = 732
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = -3
Query: 548 ENRADRLDGSEAGRRVCQAARPRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATP 387
E RA R + R C+ RP+ GPP PPR+N P PP + P
Sbjct: 68 EERA-RAEADARRRERCRNRRPQPTPGPP---PPRNNCLPPPGPPPPCQQYQQP 117
>Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical
protein F25H8.5b protein.
Length = 369
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = -3
Query: 548 ENRADRLDGSEAGRRVCQAARPRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATP 387
E RA R + R C+ RP+ GPP PPR+N P PP + P
Sbjct: 68 EERA-RAEADARRRERCRNRRPQPTPGPP---PPRNNCLPPPGPPPPCQQYQQP 117
>Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical
protein F25H8.5a protein.
Length = 780
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = -3
Query: 548 ENRADRLDGSEAGRRVCQAARPRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATP 387
E RA R + R C+ RP+ GPP PPR+N P PP + P
Sbjct: 68 EERA-RAEADARRRERCRNRRPQPTPGPP---PPRNNCLPPPGPPPPCQQYQQP 117
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = -3
Query: 485 PRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPPVIGSERLRLQVPGWRP 336
P + GPP PP G P PP PP+ G PG P
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = -3
Query: 485 PRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPPVIGSERLRLQVPGWRP 336
P + GPP PP G P PP PP+ G PG P
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = -3
Query: 485 PRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPPVIGSERLRLQVPGWRP 336
P + GPP PP G P PP PP+ G PG P
Sbjct: 303 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 352
>Z81094-5|CAB03149.2| 675|Caenorhabditis elegans Hypothetical
protein F58G11.5 protein.
Length = 675
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +1
Query: 274 SRSGRSEDTAPSPSRRRACSPGRHPGTWRRRRSLPITGGVATSALGGKGAPAKV*FERG 450
S + RS +P +R+ SP R P RR+RS + + S+ + K ERG
Sbjct: 514 SEARRSNSRSPPRDHKRSRSPSRSPSPRRRQRSSSNSSRSSGSSSRSSSSSRKSSPERG 572
>AF536544-1|AAN77185.1| 675|Caenorhabditis elegans SR-related CTD
associated factor 6 protein.
Length = 675
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +1
Query: 274 SRSGRSEDTAPSPSRRRACSPGRHPGTWRRRRSLPITGGVATSALGGKGAPAKV*FERG 450
S + RS +P +R+ SP R P RR+RS + + S+ + K ERG
Sbjct: 514 SEARRSNSRSPPRDHKRSRSPSRSPSPRRRQRSSSNSSRSSGSSSRSSSSSRKSSPERG 572
>AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical
protein T08B2.5f protein.
Length = 838
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/41 (46%), Positives = 20/41 (48%)
Frame = +1
Query: 247 RRCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRR 369
RR RS R GRS SPSRRR R + RRRR
Sbjct: 31 RRSRSRSRDRRGGRSRSR--SPSRRRTSRDRRDDRSSRRRR 69
>AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical
protein T08B2.5c protein.
Length = 866
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/41 (46%), Positives = 20/41 (48%)
Frame = +1
Query: 247 RRCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRR 369
RR RS R GRS SPSRRR R + RRRR
Sbjct: 59 RRSRSRSRDRRGGRSRSR--SPSRRRTSRDRRDDRSSRRRR 97
>AF000263-10|AAM22070.1| 163|Caenorhabditis elegans Hypothetical
protein T08B2.5d protein.
Length = 163
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/41 (46%), Positives = 20/41 (48%)
Frame = +1
Query: 247 RRCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRR 369
RR RS R GRS SPSRRR R + RRRR
Sbjct: 117 RRSRSRSRDRRGGRSRSR--SPSRRRTSRDRRDDRSSRRRR 155
>AF000263-9|AAO21391.2| 184|Caenorhabditis elegans Hypothetical
protein T08B2.5e protein.
Length = 184
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/41 (46%), Positives = 20/41 (48%)
Frame = +1
Query: 247 RRCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRR 369
RR RS R GRS SPSRRR R + RRRR
Sbjct: 138 RRSRSRSRDRRGGRSRSR--SPSRRRTSRDRRDDRSSRRRR 176
>AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical
protein T08B2.5a protein.
Length = 924
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/41 (46%), Positives = 20/41 (48%)
Frame = +1
Query: 247 RRCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRR 369
RR RS R GRS SPSRRR R + RRRR
Sbjct: 117 RRSRSRSRDRRGGRSRSR--SPSRRRTSRDRRDDRSSRRRR 155
>AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical
protein T08B2.5b protein.
Length = 925
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/41 (46%), Positives = 20/41 (48%)
Frame = +1
Query: 247 RRCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRR 369
RR RS R GRS SPSRRR R + RRRR
Sbjct: 118 RRSRSRSRDRRGGRSRSR--SPSRRRTSRDRRDDRSSRRRR 156
>Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical
protein F33E2.6 protein.
Length = 846
Score = 27.9 bits (59), Expect = 9.5
Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Frame = -3
Query: 467 PPRVEPPRSNYTFAGAPFPPRAEVATPPVIGSERLRLQVPGWRP--GEQARRLEGDGAVS 294
PPR EPP+ T A PP+ E V + R +VP P EQ R VS
Sbjct: 660 PPRTEPPK---TEAPRTVPPKTEAPMTEVPMTGPSRTEVPMTEPPKTEQPRTAPPRTEVS 716
Query: 293 SDRPDRDRALRTSQRRCKSHYPMT 222
P +T R + PMT
Sbjct: 717 MTLPPETVPPKTEAPR--TEVPMT 738
>U40800-4|AAO91742.1| 763|Caenorhabditis elegans Hypothetical
protein D2096.12 protein.
Length = 763
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Frame = -3
Query: 590 PEGEASVVAAHPVRENRADRLDGSEAGRRVCQAARPRLQHGPPRVEPPRSNYTFAGAPFP 411
P+ + S P + + L S + + +A P +Q PP PP+ + + P
Sbjct: 43 PDSDDSFETFAPTQTTTGNSLKSSASSTQSTEAKPPPVQFPPPSKNPPKHVHQQNVSKSP 102
Query: 410 -----PRAEVATPPVIGSERLRLQVP 348
PR +V T P I + + Q P
Sbjct: 103 LIPQLPRNQVPTRPQINTVQSVQQKP 128
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,595,042
Number of Sequences: 27780
Number of extensions: 302817
Number of successful extensions: 1144
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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