Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_A18
(850 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0202 - 1638978-1639571 73 2e-13
02_01_0158 - 1103461-1104186 73 3e-13
03_06_0157 - 32039020-32039175,32039267-32039338,32039478-320396... 30 2.7
05_02_0119 + 6793292-6793613,6795793-6795952,6796416-6796458,679... 29 4.7
04_04_1582 - 34590698-34591199,34593849-34594690 29 4.7
03_01_0483 + 3689155-3689814 29 6.2
04_01_0564 - 7222788-7223162,7223258-7223401,7223500-7224501 28 8.2
03_06_0609 - 35042276-35042388,35042476-35042527,35042624-350427... 28 8.2
03_05_0145 + 21254448-21255488 28 8.2
01_06_0756 - 31731607-31731752,31732368-31732467,31732716-317329... 28 8.2
>08_01_0202 - 1638978-1639571
Length = 197
Score = 73.3 bits (172), Expect = 2e-13
Identities = 40/93 (43%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Frame = +1
Query: 208 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 387
+E+V GTVKWF+ G+GFI +D ED+FVHQ+++ + RS+ DG+ VEF+V +
Sbjct: 3 SERVKGTVKWFDATKGFGFITPDDGGEDLFVHQSSLKSD----GYRSLNDGDVVEFSVGS 58
Query: 388 GEKG-FEAAGVTGPGGEPVK-GSPYAADKRRGY 480
G G +A VT PGG + GS + RGY
Sbjct: 59 GNDGRTKAVDVTAPGGGALTGGSRPSGGGDRGY 91
>02_01_0158 - 1103461-1104186
Length = 241
Score = 72.9 bits (171), Expect = 3e-13
Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +1
Query: 208 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 387
A + GTVKWFN G+GFI+ +D ED+FVHQ++I + RS+ +GE VEFA+
Sbjct: 4 AARHRGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKAD----GFRSLAEGEQVEFAISE 59
Query: 388 GEKG-FEAAGVTGPGGEPVKG 447
E G +A VTGP G VKG
Sbjct: 60 SEDGRTKAVDVTGPDGSFVKG 80
>03_06_0157 -
32039020-32039175,32039267-32039338,32039478-32039602,
32039678-32040559,32040623-32040692,32041248-32041739,
32041985-32042044,32042541-32042618,32043322-32044344
Length = 985
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 358 GEAVEFAVVAGEKGFEAAGVTGPGGEPVKG 447
GE+ E ++ GE E V GPGGEP G
Sbjct: 388 GESKEDEIIEGEPDPEMEVVAGPGGEPKVG 417
>05_02_0119 +
6793292-6793613,6795793-6795952,6796416-6796458,
6797015-6797335
Length = 281
Score = 29.1 bits (62), Expect = 4.7
Identities = 29/94 (30%), Positives = 35/94 (37%), Gaps = 13/94 (13%)
Frame = +1
Query: 235 WFNVKSGYGF-INRNDTKEDVFVHQTAIARNNPRKAVRSVGDGE--------AVEFAVVA 387
W NV SG R +E V R +P +A + G E VA
Sbjct: 8 WINVSSGLDSGRQRGRRREGALVAWGGAQRTSPVEAAARMESGGWHRRTSMIVREELEVA 67
Query: 388 GE----KGFEAAGVTGPGGEPVKGSPYAADKRRG 477
G+ G EA G +GPGGE D RRG
Sbjct: 68 GDGRRASGVEAPGGSGPGGERTMAPANIDDSRRG 101
>04_04_1582 - 34590698-34591199,34593849-34594690
Length = 447
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 352 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 474
GDG E + G+KG G G GG KGS ++++ R
Sbjct: 229 GDGGVEEGSAGGGKKGGGGGGGGGGGGHGEKGSAKSSEQER 269
>03_01_0483 + 3689155-3689814
Length = 219
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +1
Query: 352 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRG 477
GDG A AG G +AA G G +PV+GS +D RG
Sbjct: 62 GDGGADPVRGSAG--GSDAARGDGGGADPVRGSAGGSDAARG 101
>04_01_0564 - 7222788-7223162,7223258-7223401,7223500-7224501
Length = 506
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 90 RRWWQRW*NTPRPLLDVHRLSS 25
RRW W +TP L+D H LSS
Sbjct: 81 RRWRPLWRSTPLVLVDAHLLSS 102
>03_06_0609 -
35042276-35042388,35042476-35042527,35042624-35042725,
35043546-35043745,35045258-35045336,35045541-35045595,
35045947-35046122,35046386-35046988,35047077-35047265,
35048150-35048201,35048289-35048356,35048873-35048911,
35048912-35048970,35049639-35049782,35050136-35050238,
35050368-35050467,35050596-35050612
Length = 716
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -2
Query: 423 TSNTSCFKAFLPGNHGKLHRLSVADRAHSLTWVVTGDGSLMHK 295
T N ++ FLP G + L + D ++ W ++ + SL HK
Sbjct: 293 TENDCAWQRFLPS--GPIALLPIGDNYSNIVWTMSPEESLRHK 333
>03_05_0145 + 21254448-21255488
Length = 346
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +3
Query: 477 LPPPIFPSFKVADEAVKELHAEED*DVVDPRPTKGVHKEMRVKKE 611
LPPP+ V +E VKE+ +E V PRP KE+ +KE
Sbjct: 35 LPPPVV----VEEEEVKEVLSETAVPVSRPRPPPEPEKEVVKRKE 75
>01_06_0756 -
31731607-31731752,31732368-31732467,31732716-31732943,
31733390-31733474,31733583-31733662,31733755-31733826,
31733964-31734058,31735442-31735523,31735646-31735927
Length = 389
Score = 28.3 bits (60), Expect = 8.2
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Frame = +1
Query: 202 VIAEKVSGTVKWFNVKSGYGF--INRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEF 375
+++EK GT +V+S + +N N + ED+ HQ A+ + +S G G+ +
Sbjct: 281 MVSEKNGGTD---SVESAFDNENVNSNISHEDMHQHQKVNAKGGRKGRYKSQGRGQIQQN 337
Query: 376 AVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGY 480
G A + +P+ G P D RG+
Sbjct: 338 TSGQGHVSSPATSGSDHVNKPIPG-PRMPDGTRGF 371
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,467,362
Number of Sequences: 37544
Number of extensions: 352262
Number of successful extensions: 1360
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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