Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A17
         (853 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25790| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_40494| Best HMM Match : fn3 (HMM E-Value=9.2e-21)                   31   1.6  

>SB_25790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -1

Query: 583 AVHRELSRIHTPFDEVSAHHFSRSLLEGLIFL-TNRIIER 467
           ++H  + + H   +E     +SR +LEG+++L TNRI+ R
Sbjct: 2   SIHEHIKQ-HGALNESLTRKYSRQILEGILYLHTNRIVHR 40


>SB_40494| Best HMM Match : fn3 (HMM E-Value=9.2e-21)
          Length = 600

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 353 VKKGGRYQMQVELCNSDGCSSSEGVEIVVADTDGSH 460
           V  G  YQ+ V+ CNS GC  S     V  D  G +
Sbjct: 275 VLPGTTYQISVQACNSAGCGESSRAVNVTTDKKGDN 310


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,121,113
Number of Sequences: 59808
Number of extensions: 476080
Number of successful extensions: 1311
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)