Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A17
         (853 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical...    30   1.8  
AL110490-16|CAB54451.2|  922|Caenorhabditis elegans Hypothetical...    29   5.5  
AF040642-10|AAB94949.2|  576|Caenorhabditis elegans Hypothetical...    29   5.5  
U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily ass...    28   9.7  
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass...    28   9.7  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    28   9.7  
AC006655-5|AAF39873.1|  172|Caenorhabditis elegans Hypothetical ...    28   9.7  

>AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical
            protein Y67D8C.9 protein.
          Length = 1073

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
 Frame = -2

Query: 474  SRGLKWLPSVSATTISTPSLELHPSELQSSTCIWYLPPFFTLKAADVALPAPLQ-TSFLS 298
            S   K L   +   +ST +  ++ S LQS   + Y P F     A++A  +  + T+  S
Sbjct: 944  SHDQKLLRRTARAIVSTKNAVVYASALQSDFSLHYNPTFRKYLWAEIAKMSTFEKTALFS 1003

Query: 297  SRTLDLSAASPV--HTFQ-LTETSAASFLVTSW 208
            + + D+  AS +  H+ + + E      L+T+W
Sbjct: 1004 TNSTDILPASRILLHSVKTIDELQQIRGLLTNW 1036


>AL110490-16|CAB54451.2|  922|Caenorhabditis elegans Hypothetical
           protein Y48B6A.11 protein.
          Length = 922

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/78 (25%), Positives = 29/78 (37%)
 Frame = +2

Query: 251 WNVWTGDAADKSRVLLDKKEVWSGAGSATSAAFKVKKGGRYQMQVELCNSDGCSSSEGVE 430
           W  W G   +   +   KKEV      + + A K+ K  R        +SDG S S G E
Sbjct: 413 WTYWYGGGRELW-IPKKKKEVPKKRRQSLADASKIAKRARLGASSTATDSDGSSGSSGSE 471

Query: 431 IVVADTDGSHLRPLDYSI 484
                +      P  Y++
Sbjct: 472 EATEGSSFMRALPAGYTV 489


>AF040642-10|AAB94949.2|  576|Caenorhabditis elegans Hypothetical
           protein C50D2.1 protein.
          Length = 576

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 1/127 (0%)
 Frame = +2

Query: 245 VNWNVWTGDAADKSRVLLDKKEVWSGAGSATSAAFKVKKGGRYQMQVELCNSDGCSSSEG 424
           V++  W G  +D     L  ++ WS      +  ++ + G +    + +    G    +G
Sbjct: 408 VDFGTWGGGYSDN----LGVRDFWSQTQEYGANWYEGQYGYKTGWSIPIVQGIGVEGGQG 463

Query: 425 VEIVVADTDGSHLRPLDYSIGEKNKPFKQTSGKVVGAYFVEWGV-YPRKFPVDRVPVPNL 601
            ++ V   +G   RP+  + G    PF   + + VG  ++  GV + + F V  V V   
Sbjct: 464 TQVSVPIKEGELGRPISVTNGYHVGPFMGLADR-VGVDWLNGGVSWNKGFAVPFVGVGVN 522

Query: 602 THLLYGF 622
           T    GF
Sbjct: 523 TGTAVGF 529


>U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform d protein.
          Length = 1379

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 631  NRNEAVEQMSQVRNRNAVHRELSR-IHTPFDEVSAHHFSRS 512
            NR+E  E  S+ +  N++H E S   H+ ++  S H+   S
Sbjct: 1301 NRSELREMRSEEKRSNSMHHEESHYAHSSYEHTSEHYSQSS 1341


>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform b protein.
          Length = 4034

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 631  NRNEAVEQMSQVRNRNAVHRELSR-IHTPFDEVSAHHFSRS 512
            NR+E  E  S+ +  N++H E S   H+ ++  S H+   S
Sbjct: 1301 NRSELREMRSEEKRSNSMHHEESHYAHSSYEHTSEHYSQSS 1341


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 631  NRNEAVEQMSQVRNRNAVHRELSR-IHTPFDEVSAHHFSRS 512
            NR+E  E  S+ +  N++H E S   H+ ++  S H+   S
Sbjct: 1301 NRSELREMRSEEKRSNSMHHEESHYAHSSYEHTSEHYSQSS 1341


>AC006655-5|AAF39873.1|  172|Caenorhabditis elegans Hypothetical
           protein H10D18.1 protein.
          Length = 172

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 8/29 (27%), Positives = 20/29 (68%)
 Frame = +2

Query: 176 VEVNQAATAYNQLVTKKDAADVSVNWNVW 262
           +E+++   AY Q+++ K  +D ++ WN++
Sbjct: 3   LEISEKIKAYRQVMSAKSPSDAALTWNLF 31


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,554,965
Number of Sequences: 27780
Number of extensions: 356444
Number of successful extensions: 1077
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)