Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A17
         (853 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62360.1 68416.m07005 expressed protein                             31   0.97 
At4g15420.1 68417.m02359 PRLI-interacting factor K nearly identi...    31   1.3  
At5g17310.2 68418.m02028 UTP--glucose-1-phosphate uridylyltransf...    28   9.1  
At4g22980.1 68417.m03316 expressed protein ; expression supporte...    28   9.1  

>At3g62360.1 68416.m07005 expressed protein
          Length = 1227

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +2

Query: 326 GSATSAAFKVKKGGRYQMQVELCNSDGCSSSEGVEIVVADTDGSHL 463
           G+    +  +K GG   + VEL +SDG  S + V  V+  +DGS+L
Sbjct: 138 GAVGGESCLIKNGGPADVNVELLSSDG--SEDPVASVLTSSDGSYL 181


>At4g15420.1 68417.m02359 PRLI-interacting factor K nearly identical
           to PRLI-interacting factor K [Arabidopsis thaliana]
           GI:11139266; contains Pfam profiles PF03152: Ubiquitin
           fusion degradation protein UFD1, PF00096: Zinc finger,
           C2H2 type
          Length = 561

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
 Frame = +2

Query: 176 VEVNQAATAYNQLVTKKDAADVSVNWNVWTG-DAADKSRVLLDKKEVWSGAGSATSAAFK 352
           V+V +     +  V+K      S+N + W+  D   K+ +L+ K+   S +G+ +   + 
Sbjct: 307 VDVEKVGADTDLYVSKHPVLFPSLNQHEWSSHDVGSKTLILVSKERALS-SGTYSIGVYG 365

Query: 353 VKKGGRYQMQVELCNS-DGCSSSEGVEIVVADTDGSHLRPLDYSIGEKN 496
            K   +YQ+ V +  S DG    E      +D D    R   +SI  ++
Sbjct: 366 FKGTVKYQVSVLVQESIDGAKVGERAVSSSSDVDTVECRNCKHSIPSRS 414


>At5g17310.2 68418.m02028 UTP--glucose-1-phosphate
           uridylyltransferase, putative / UDP-glucose
           pyrophosphorylase, putative / UGPase, putative strong
           similarity to SP|P19595 UTP--glucose-1-phosphate
           uridylyltransferase (EC 2.7.7.9) (UDP-glucose
           pyrophosphorylase) (UDPGP) (UGPase) {Solanum tuberosum};
           contains Pfam profile PF01704: UTP--glucose-1-phosphate
           uridylyltransferase
          Length = 470

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -1

Query: 661 QTVIDAITTTNRNEA---VEQMSQVRNRNAVHRELSRIHTPFDEV 536
           ++ +D +T  + NE    +  +S+  +  A H E S+I TP DE+
Sbjct: 13  KSAVDGLTEMSENEKSGFINLVSRYLSGEAQHIEWSKIQTPTDEI 57


>At4g22980.1 68417.m03316 expressed protein ; expression supported
           by MPSS
          Length = 559

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 1/122 (0%)
 Frame = -1

Query: 664 FQTVIDAITTTN-RNEAVEQMSQVRNRNAVHRELSRIHTPFDEVSAHHFSRSLLEGLIFL 488
           F+T  + +T  N  +EAVE+M ++  +  +  + +    P  E+ +    R +       
Sbjct: 188 FKTNPNLLTVYNYEDEAVEEMIRISEKKGIKPQSAEFSWPSTEILSEKLKRRITRSKRRG 247

Query: 487 TNRIIERPQMATISVSYYDFDALARAASV*VAELDLHLVSSALLHFESGRCGAAGTAPDF 308
              +   P  + ++ + Y +  ++ A     +E  + L +SAL   +    G +   PDF
Sbjct: 248 KRGLFVFPLQSLVTGASYSYSWMSLARE---SEWHVLLDTSALGSKDMETLGLSLFQPDF 304

Query: 307 LL 302
           L+
Sbjct: 305 LI 306


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,856,499
Number of Sequences: 28952
Number of extensions: 343578
Number of successful extensions: 932
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)