Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A16
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...   108   1e-24
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    47   3e-06
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    29   0.83 
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    27   3.4  
SPAC4G9.06c |||histone chaperone Chz1 |Schizosaccharomyces pombe...    27   4.4  
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    27   4.4  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    26   7.8  

>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score =  108 bits (259), Expect = 1e-24
 Identities = 55/170 (32%), Positives = 96/170 (56%)
 Frame = +3

Query: 30  SIHGYITNVNYSNKKGILLLFINHRLVDSQAIRKAVDSVYSTYLPKNSHAFVYLSIELDP 209
           S +G+I+N ++ +KK  L+LFIN+RLV+S  +R A++  Y+ YL K +  FVYLS+ + P
Sbjct: 252 SANGFISNADFQDKKSNLILFINNRLVESVELRHALEETYAKYLHKGASYFVYLSLNMSP 311

Query: 210 KNVDVNVHPTKHEVQFLYEEQIVEKIKTCIETKLLGCSSTRVLYTQARLPGAAQPRDVAD 389
           + +DVNVHP+K  V FLY+++I   I   +   L    + R    QA +P  +  ++   
Sbjct: 312 EQLDVNVHPSKRIVHFLYDQEIATSICDKLGEILERTDTERSYPLQAMIPSISNTKNAES 371

Query: 390 KPTDAAKTSAAHMVRVNPNVQKIDKFFELEPNKTKQPTGDNASDVVNDVD 539
               A +T   ++VR +P  + I     L  N  ++ + +  ++++  VD
Sbjct: 372 SSQKAVRTYENYLVRTDPRERSIKSM--LSDNFLQRSSNNYDNEIIEKVD 419


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
 Frame = +3

Query: 33  IHGYITNVNYSNKKGI---LLLFINHRLVDSQAIRKAVDSVYSTYLPKNSHAFVYLSIEL 203
           I GYI+  +  + +      +LFIN RLV+   I + +  V+  Y    S  F  +++ +
Sbjct: 237 IEGYISRPHVGSTRASNERQMLFINRRLVNLPKIARVIQEVFKPYSMAQSPFFA-INLRI 295

Query: 204 DPKNVDVNVHPTKHEVQFLYEEQIVEKIKTCIETKLLGC 320
               +D+NV P K  V    E+ I+E IK  ++     C
Sbjct: 296 TNGTIDINVSPDKKSVFLSEEDSIIEFIKNSLQNLCESC 334


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +3

Query: 399 DAAKTSAAHMVRVNPNVQKIDKFFELEPNKTKQPTGDNA-SDVVNDVDQQQKIPSEQDLN 575
           +A ++   H++  +  +  I  F E   N   +   +N  SD     +QQ KI  E D+ 
Sbjct: 692 EALRSRVVHVL--SRAINTILPFSEASQNDVSEDDFENEESDDDKIFEQQTKI--EDDVK 747

Query: 576 NSIVKEPAEDNKVQEKWKQ 632
           N    EP E+ K +EK +Q
Sbjct: 748 NENKTEPVEEQKSEEKNEQ 766


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +3

Query: 111 DSQAIRKAVDSVYSTYLPKNSHAFVYLSIELDPKNVDVNVHPTKHEVQFLYEEQIVEKIK 290
           D  +IR+AV     TY     H      +  +P N+D  + P   + +++  + + EK+ 
Sbjct: 150 DESSIREAVIKSEGTYYETAPH------LSSEPSNIDHGIIPRDEKDEYVTVDAVTEKVV 203

Query: 291 T 293
           T
Sbjct: 204 T 204


>SPAC4G9.06c |||histone chaperone Chz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +3

Query: 477 EPNKTK-QPTGDNASDVVNDVDQQQKIPSEQDLNNSIVKEPAEDNKVQEKWKQYTEAGQA 653
           EP K   +  G    D++ D+D ++     QDL++S   + ++D+ +QE +    +    
Sbjct: 4   EPKKIDIKGKGRAIEDLIPDIDDEEDDVDFQDLSSSGESDDSDDS-MQEDYDDIHDEEPE 62

Query: 654 NITYVDP 674
           + + +DP
Sbjct: 63  DYSAIDP 69


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 624 WKQYTEAGQANITYVDPKDSFRLE 695
           WK Y E+ +A I  VD  D  RLE
Sbjct: 77  WKNYFESTEAIIWVVDSLDDLRLE 100


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 17/57 (29%), Positives = 23/57 (40%)
 Frame = +3

Query: 390 KPTDAAKTSAAHMVRVNPNVQKIDKFFELEPNKTKQPTGDNASDVVNDVDQQQKIPS 560
           KP   AKT+       N    K     + E  K   PTG  AS++ + V     +PS
Sbjct: 729 KPNTDAKTNLLPEKTFNEEAVK-----QKETEKEVPPTGPKASEIKDSVSSNNAVPS 780


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,890,833
Number of Sequences: 5004
Number of extensions: 54561
Number of successful extensions: 184
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)