Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_A16
(849 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0248 + 42261373-42261609,42261733-42261905,42261986-422620... 114 7e-26
02_01_0125 + 920128-920392,920491-921839,921921-922084,922340-92... 31 1.5
07_03_1794 - 29580767-29584189 30 2.0
03_03_0044 - 14021874-14022050,14022235-14022390,14023024-140232... 30 2.0
04_03_0130 - 11622139-11623325,11626144-11627116 30 2.7
08_02_0751 + 20789843-20789908,20791152-20791313,20791516-207915... 29 4.7
12_01_0977 - 9900073-9900521,9900594-9900698,9900770-9900959,990... 28 8.2
04_01_0058 + 592846-593185,594641-595182,596298-596987,597078-59... 28 8.2
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 28 8.2
01_06_1257 - 35778078-35778299,35778952-35779069,35779294-357794... 28 8.2
>01_07_0248 +
42261373-42261609,42261733-42261905,42261986-42262058,
42262148-42262282,42262352-42262562,42262886-42263034,
42263169-42263267,42263821-42263989,42264176-42264308,
42264600-42264694,42264774-42264882,42265136-42265295,
42265433-42265594,42265814-42265985,42266254-42266402,
42266914-42266951,42267779-42267839,42267913-42268155,
42268233-42268315,42269521-42269609,42270449-42270495,
42270576-42270656,42270737-42270899,42271077-42271267,
42271691-42271762
Length = 1097
Score = 114 bits (275), Expect = 7e-26
Identities = 52/103 (50%), Positives = 74/103 (71%)
Frame = +3
Query: 39 GYITNVNYSNKKGILLLFINHRLVDSQAIRKAVDSVYSTYLPKNSHAFVYLSIELDPKNV 218
GYI+N NY KK ++LFIN RLVD A+++A++ VYS LP+ S F+Y+SI L ++V
Sbjct: 257 GYISNANYVAKKITMILFINDRLVDCTALKRAIEFVYSATLPQASKPFIYMSIHLPSEHV 316
Query: 219 DVNVHPTKHEVQFLYEEQIVEKIKTCIETKLLGCSSTRVLYTQ 347
DVN+HPTK EV L +E+I+E I+ IE KL+ ++TR+ TQ
Sbjct: 317 DVNIHPTKKEVSLLNQERIIETIRNAIEEKLMNSNTTRIFQTQ 359
>02_01_0125 +
920128-920392,920491-921839,921921-922084,922340-922370,
922534-922565,922730-923060,923210-923713
Length = 891
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +3
Query: 555 PSEQDLNNSIVK--EPAEDNKVQEKWKQYTEAGQANITYVDPKDSFRLERF 701
P + DL+ +I+ E E ++ +KW + +E N +VD D RLE F
Sbjct: 731 PLQIDLSTAILSLSENGELQRIHDKWLKTSECSADNTEFVD-SDQLRLESF 780
>07_03_1794 - 29580767-29584189
Length = 1140
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +3
Query: 426 MVRVNPNVQKIDKFFELEPNKTKQPTGDNASDVVNDV-DQQQKIPSEQDLNNSIVKEPAE 602
++ + P +KI+KFFEL Q + ++V+ V + + K P + ++ +K+ E
Sbjct: 259 ILELQPIYEKIEKFFELNSESVVQEMAERVDELVDKVMNLELKFPKQ----SAQIKQLKE 314
Query: 603 DN 608
DN
Sbjct: 315 DN 316
>03_03_0044 -
14021874-14022050,14022235-14022390,14023024-14023203,
14023816-14024074,14024178-14024416,14025180-14025260,
14025320-14025328
Length = 366
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 3 LVWIANLKLSIHGYITNVNYSNKKGILLLFINHR 104
L W+ N + H Y VNY NKKG++++F+ R
Sbjct: 190 LKWMLNQGIMEH-YHDIVNYLNKKGVMVIFLFRR 222
>04_03_0130 - 11622139-11623325,11626144-11627116
Length = 719
Score = 29.9 bits (64), Expect = 2.7
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Frame = +3
Query: 93 INHRLVDSQAIRKAVDSVY-STYLPKNSHAFVYLSIELDPKNVDVNVHPTK-----HEVQ 254
++ +L D + I A ++ S L + VY +LDP+N V + K ++
Sbjct: 380 VSFKLYDREEIELATNNFRESAILGQGGQGTVYKGFDLDPENNPVAIKRCKGIDANRRME 439
Query: 255 FLYEEQIVEKIKTCIETKLLGC 320
F E I+ +++ KLLGC
Sbjct: 440 FGQELLILSRVRHEYIVKLLGC 461
>08_02_0751 +
20789843-20789908,20791152-20791313,20791516-20791566,
20792096-20792160,20792385-20792459,20792603-20792780,
20793171-20793353,20793436-20793549,20793627-20793736,
20793826-20793904,20794035-20794172
Length = 406
Score = 29.1 bits (62), Expect = 4.7
Identities = 21/79 (26%), Positives = 37/79 (46%)
Frame = +3
Query: 354 LPGAAQPRDVADKPTDAAKTSAAHMVRVNPNVQKIDKFFELEPNKTKQPTGDNASDVVND 533
+P A QP D P+ A +++ + PN +D F ++ PN + G N DV+ +
Sbjct: 225 VPAAVQPVD----PSQAPQSAQLSIPSSGPNANPLDLFPQVLPNASANAGGGNL-DVLRN 279
Query: 534 VDQQQKIPSEQDLNNSIVK 590
Q + + S N I++
Sbjct: 280 NSQFRGLLSLVQANPQILQ 298
>12_01_0977 -
9900073-9900521,9900594-9900698,9900770-9900959,
9901035-9901093,9901297-9901688,9901770-9902059,
9902146-9903030
Length = 789
Score = 28.3 bits (60), Expect = 8.2
Identities = 31/125 (24%), Positives = 41/125 (32%), Gaps = 1/125 (0%)
Frame = +3
Query: 306 KLLGCSSTRVLYTQARLPGAAQPRDVADKPTDAAKTSAAHMVRVNPNVQKIDKFFELEPN 485
KL G ++ T +R P P K D A T P + E +P
Sbjct: 378 KLAGRQMPKIR-TSSRKPSDIDP---TGKEPDPAATEPNLSKDAEPTAES-QPTAESQPT 432
Query: 486 KTKQPTGDNAS-DVVNDVDQQQKIPSEQDLNNSIVKEPAEDNKVQEKWKQYTEAGQANIT 662
QPTG AS D N DQ + +EP N+ Q +A T
Sbjct: 433 AESQPTGAQASDDKANPSDQPPTGNQSAATETATTREPPTGNQSDVDLNQEIPEAEAQTT 492
Query: 663 YVDPK 677
P+
Sbjct: 493 SQGPE 497
>04_01_0058 +
592846-593185,594641-595182,596298-596987,597078-597233,
597277-597856,598601-598764,598907-599100,599702-599750,
599777-599806
Length = 914
Score = 28.3 bits (60), Expect = 8.2
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +3
Query: 408 KTSAAHMVRVNPNVQKIDKFFELEPNKTKQPTGDNASDVVNDV 536
K+S V V N ++ + EP K K+ +G+N S++VNDV
Sbjct: 453 KSSGDINVDVCSNTGVSNRSSDTEPTK-KETSGENTSNIVNDV 494
>02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 28.3 bits (60), Expect = 8.2
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +3
Query: 486 KTKQPTGDNASDVVNDVDQQQKIP-SEQDLNNSIVKEPAEDNKVQEKWKQYTEAGQANIT 662
K K G N S+VV+D DQ+ P S+ L E E+ +K K E ++
Sbjct: 1156 KIKGRAGQNPSEVVDDEDQRSPPPKSDHSLIEKESSEVKENGTFIQKEKLKEEIPGNTLS 1215
Query: 663 YVDPKDSFRLE 695
+ P+D F E
Sbjct: 1216 RI-PQDDFTEE 1225
>01_06_1257 -
35778078-35778299,35778952-35779069,35779294-35779433,
35779763-35779864,35779971-35780051,35780333-35780402,
35781053-35781114,35781789-35782183,35782303-35782386,
35782949-35783041,35783144-35783195,35783310-35783376,
35783492-35783550,35784209-35784256,35784927-35785040,
35785162-35785335,35785417-35785944,35786025-35786094,
35786668-35786711
Length = 840
Score = 28.3 bits (60), Expect = 8.2
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Frame = +3
Query: 384 ADKPTDAAKTSAAHMVRVNPNVQKIDKFFELE---PNKTKQPTGDNA---SDVVNDVDQQ 545
ADK A + +A+ + P+ D+F+++E PN+ + P D+A S + D +Q+
Sbjct: 132 ADKENAANELQSANNEEIKPSEDSDDEFYDVEKVDPNQ-EGPVADSADADSGMNVDANQE 190
Query: 546 QKIPSEQDLNNSIVKEPAEDNKVQEKWKQYTEAGQANI 659
P +++L +V++ E W+ + G +
Sbjct: 191 GHYPWKEEL-ECLVRDGLPMALRGELWQAFVGIGARRV 227
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,007,192
Number of Sequences: 37544
Number of extensions: 328491
Number of successful extensions: 1087
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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