Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A16
         (849 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          24   2.0  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          24   2.0  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          24   2.0  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          24   2.0  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    24   2.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.7  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   6.2  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   6.2  

>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 215 RGRQRSSNETRSSVSLRGANRREDQDVHRNE 307
           R R RS   T S  S    +R ED++ +RN+
Sbjct: 218 RSRSRSFQRTSSCHSRYEDSRHEDRNSYRND 248


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 215 RGRQRSSNETRSSVSLRGANRREDQDVHRNE 307
           R R RS   T S  S    +R ED++ +RN+
Sbjct: 218 RSRSRSFQRTSSCHSRYEDSRHEDRNSYRND 248


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 215 RGRQRSSNETRSSVSLRGANRREDQDVHRNE 307
           R R RS   T S  S    +R ED++ +RN+
Sbjct: 218 RSRSRSFQRTSSCHSRYEDSRHEDRNSYRND 248


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 215 RGRQRSSNETRSSVSLRGANRREDQDVHRNE 307
           R R RS   T S  S    +R ED++ +RN+
Sbjct: 218 RSRSRSFQRTSSCHSRYEDSRHEDRNSYRND 248


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 215 RGRQRSSNETRSSVSLRGANRREDQDVHRNE 307
           R R RS   T S  S    +R ED++ +RN+
Sbjct: 218 RSRSRSFQRTSSCHSRYEDSRHEDRNSYRND 248


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 534 HHLLRHSHYLQS 499
           HHL  H H+LQS
Sbjct: 142 HHLQNHHHHLQS 153


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 173 TRICILEH*IRSEKRG-RQRSSNETRSSVSLRGANRREDQDVHRNE 307
           T+ C  ++ I S   G R RS   T S  S    +R ED++ +RN+
Sbjct: 204 TKTC-KKYAISSNSLGSRSRSFQRTSSCHSRYEDSRHEDRNSYRND 248


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 215 RGRQRSSNETRSSVSLRGANRREDQDVHRNE 307
           R R RS   T S  S     R ED++ +RN+
Sbjct: 218 RSRSRSFQRTSSCHSRYEDLRHEDRNSYRND 248


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,611
Number of Sequences: 438
Number of extensions: 3659
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)