Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_A15
(820 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 34 0.021
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub... 31 0.15
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 31 0.20
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa... 31 0.20
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 31 0.26
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces... 30 0.45
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 30 0.45
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 29 0.60
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa... 28 1.4
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 28 1.8
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 28 1.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.8
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 2.4
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc... 27 2.4
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 27 2.4
SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces... 27 3.2
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 27 3.2
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 27 3.2
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 27 4.2
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 27 4.2
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc... 26 5.6
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 26 5.6
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc... 26 7.4
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1... 22 9.6
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 25 9.8
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 25 9.8
SPAC6G9.03c |mug183||histone chaperone Rtt106-like|Schizosacchar... 25 9.8
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 34.3 bits (75), Expect = 0.021
Identities = 20/77 (25%), Positives = 39/77 (50%)
Frame = +3
Query: 6 EKKTKRGRKAAGDTNGQDENGKIEETAPKKGRKKNVEEPPVENKSTDEPSVEDEVAVSEE 185
E+ ++ ++ ++ +E + EE+ + +KK V +++S E S E+E SEE
Sbjct: 40 EESSEEESASSSESESSEEESESEESEVEVPKKKAVAASE-DSESDSESSEEEEETESEE 98
Query: 186 NNPSEDGSETNGHIEEE 236
++ D SE+ E E
Sbjct: 99 DSEVSDESESESESESE 115
>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 214
Score = 31.5 bits (68), Expect = 0.15
Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
Frame = +3
Query: 3 LEKKTKRGRKAAGDTNGQDENGKIEETAPKKG----RKKNVEEPPVENKSTDEPSVEDEV 170
L KT+ +A D G G E+ K+ + E P E K E +E
Sbjct: 63 LSLKTQEPIVSADDAKGAQGKGADEKEEKKETIQPPEEVKTEPPQPEEKEGKEAKEPEEP 122
Query: 171 AVSEENNPSEDGSETNGHIEEEQV 242
E P E G E EEE++
Sbjct: 123 PKEEAEEPQEGGEEEEEEEEEEEI 146
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 31.1 bits (67), Expect = 0.20
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +3
Query: 6 EKKTKRGRKAAGDTNGQDENGKIEETAPKKGRKKNVEEPPVENKSTDEPSVEDEVAV-SE 182
+KK+K+ +++ ++ + + + E ++ + + E S+ E E+EV V +E
Sbjct: 74 QKKSKKKEESSSESESESSSSESESSSSESESSSSESESSSSESSSSES--EEEVIVKTE 131
Query: 183 ENNPSEDGSETNGHIEEEQ 239
E S S ++ EEE+
Sbjct: 132 EKKESSSESSSSSESEEEE 150
Score = 29.9 bits (64), Expect = 0.45
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Frame = +3
Query: 6 EKKTKRGRKAAGDTNGQDENGKIEETAPKK-GRKKNVEEPPVENKSTDEPSVEDEVAVSE 182
E + + + ++E +E+T KK G ++ + + S+ E D + SE
Sbjct: 169 ESSSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSE 228
Query: 183 ENNPSEDGSETNGHIEEEQVPS 248
+ SED + E+ P+
Sbjct: 229 SESSSEDEKKRKAEPASEERPA 250
>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 31.1 bits (67), Expect = 0.20
Identities = 26/82 (31%), Positives = 37/82 (45%)
Frame = +3
Query: 6 EKKTKRGRKAAGDTNGQDENGKIEETAPKKGRKKNVEEPPVENKSTDEPSVEDEVAVSEE 185
E+KTKR R G+ E KK +K V+E +E D+ S E V EE
Sbjct: 111 ERKTKRPRARRAANEGEHN----ESVPAKKVKKNTVKEEEIEK---DDESATTETPVKEE 163
Query: 186 NNPSEDGSETNGHIEEEQVPSG 251
P+ + +E + H E+ V G
Sbjct: 164 --PTGEETEAD-HEEKASVDHG 182
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 30.7 bits (66), Expect = 0.26
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 18 KRGRKAAGDTNGQDENGKIEETAPKKGRKKNVEEPPVENKSTDEP-SVEDEVAVSEENNP 194
KR +A + G DE+ + EE PK R+ N ++ DEP V + A+ +E +
Sbjct: 45 KRIHQAFQEDEG-DEDWEEEEHKPKAKRRYNTRSNESFSEGDDEPFEVSESSALEDELSD 103
Query: 195 SED 203
SED
Sbjct: 104 SED 106
>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 29.9 bits (64), Expect = 0.45
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 141 TDEPSVEDEVAVSEENNPSEDGSETNGHIEEEQVPSGRGR 260
T+E S EDE EE+ ED + G E+++ PS + +
Sbjct: 202 TEEASDEDESVDLEEDEEEEDEEDEEGDEEKQEPPSKKSK 241
>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 652
Score = 29.9 bits (64), Expect = 0.45
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +3
Query: 30 KAAGDTNGQDENGKIEETAPKKGRKKNVEEPPVENKSTDEPSVED-EVAVSEENNPSED 203
K + GQ+ N + EE+ KK RKK V+E + D+ +VE+ E +++ +N D
Sbjct: 118 KGDKEARGQNSNDQPEESDDKKKRKKKVKE--IRATRLDDKTVEEYEFILAQIDNYDGD 174
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 29.5 bits (63), Expect = 0.60
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = +3
Query: 6 EKKTKRGRKAAGDTNGQDENGKIEETAPK--KGRKKNVEEPPVENKSTDEPSVEDEVAVS 179
++ + + RK D + +D N KIE+ K K K+ EE + +P+ E + +
Sbjct: 156 KEPSPKSRKTDEDKHDKDSNEKIEDVNEKTIKFADKSQEEFNENGPPSGQPNGHIE-SDN 214
Query: 180 EENNPSEDGSETNGHIEEEQVPS 248
E +PS+ S + I+ + PS
Sbjct: 215 ESKSPSQKESNESEDIQIAETPS 237
>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 28.3 bits (60), Expect = 1.4
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +3
Query: 48 NGQDENGKIEETAPKKGRKKNVEEPPVENKSTDEPSVEDEVAVSEENNPSEDGSETNGHI 227
N Q+++GK+ ++ K+V K +EPS ++ + V +E N D +N
Sbjct: 247 NSQEDDGKLSCSS------KDVTSSGFSMKGLNEPS-QERLPVEKEQNDKSDEEGSNNEQ 299
Query: 228 EEEQ 239
EE+Q
Sbjct: 300 EEKQ 303
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.9 bits (59), Expect = 1.8
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Frame = +3
Query: 3 LEKKTKRGRKAAGDTNGQDENGKIEETAPKKGRKKNVEEPPVENKSTDEPSVEDEV-AVS 179
+EK +AG + K+E P+ +E E K + EP V+ + S
Sbjct: 402 VEKAVSATVPSAGAQVQKHNEEKVETPKPEAQPVSKPKESAEEQKPSKEPEVKPTTPSAS 461
Query: 180 EENNPSEDGSETNGHIEEEQV 242
+ PS+ E N H +EE V
Sbjct: 462 KVEEPSKKRDEDN-HQKEETV 481
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.9 bits (59), Expect = 1.8
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 57 DENGKIEETAPKKGRKKNVEEPPVENKSTDEPSVEDEVAVSEENN-PSEDGSE 212
+E+ +E T P + VE + K + P+VE ++ V+EENN P +G E
Sbjct: 388 EEHSNLEST-PAAQQTSEVEANNHQEKPSSLPAVE-QINVNEENNTPETEGLE 438
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 1.8
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +3
Query: 30 KAAGDTNGQDENGKIEETAPKKGRKKNVEEPPVENKSTDEPSVEDEVAVSEENNPSEDGS 209
K+ G+ + Q+E+ + + + + EP E + DEPS +D +EN E+
Sbjct: 355 KSQGEISEQEEDEYDDAESDEMHSPYSTHEPESEPEDQDEPSEKD-----DENKDVEEEQ 409
Query: 210 ETNGHIEEEQV 242
E EEEQ+
Sbjct: 410 EQEQ--EEEQI 418
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.5 bits (58), Expect = 2.4
Identities = 18/76 (23%), Positives = 36/76 (47%)
Frame = +3
Query: 3 LEKKTKRGRKAAGDTNGQDENGKIEETAPKKGRKKNVEEPPVENKSTDEPSVEDEVAVSE 182
LE + K ++A + N D K ++ K K+ +E E + +D+ ++DE+
Sbjct: 4013 LETEQKSNEQSAAN-NESDLVSKEDDN--KALEDKDRQEKEDEEEMSDDVGIDDEIQPDI 4069
Query: 183 ENNPSEDGSETNGHIE 230
+ N S+ E H++
Sbjct: 4070 QENNSQPPPENEDHLD 4085
Score = 26.6 bits (56), Expect = 4.2
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 17/85 (20%)
Frame = +3
Query: 42 DTNGQDENGKIEETAPKKGRKKNVEEPPVENKSTDEPSVEDEVA---------------- 173
D DEN K E A K ++ E+P EN + DE +D+ +
Sbjct: 4109 DMEAADEN-KEEADAEKDEPMQDFEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEE 4167
Query: 174 -VSEENNPSEDGSETNGHIEEEQVP 245
V E +EDG +++ +E+ +VP
Sbjct: 4168 NVQENEESTEDGVKSDEELEQGEVP 4192
>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 27.5 bits (58), Expect = 2.4
Identities = 18/75 (24%), Positives = 30/75 (40%)
Frame = +3
Query: 18 KRGRKAAGDTNGQDENGKIEETAPKKGRKKNVEEPPVENKSTDEPSVEDEVAVSEENNPS 197
K ++ T G+D RK ++ P+EN EP + E +SE+
Sbjct: 177 KTDTRSTEKTKGKDIFSNARNQKGNSSRKN--KKAPLENHKEKEPLLPKEEKLSEQAKRE 234
Query: 198 EDGSETNGHIEEEQV 242
D + +E+E V
Sbjct: 235 RDDLKNIMQLEDESV 249
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +3
Query: 147 EPSVEDEVAVSEENNPSEDGSETNGHIEEEQ 239
E + EDE+ SEE DG + NG EEEQ
Sbjct: 36 EDAYEDEIE-SEEEYIEADGEKDNGMDEEEQ 65
>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 124 RWKINLLMNPQLKMKWQCLRKIIL 195
RWKI P L +W+C R ++L
Sbjct: 78 RWKIQPKKVPTLAEQWECTRLVLL 101
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/67 (19%), Positives = 29/67 (43%)
Frame = +3
Query: 45 TNGQDENGKIEETAPKKGRKKNVEEPPVENKSTDEPSVEDEVAVSEENNPSEDGSETNGH 224
T+ +DE+ E +KK + +N + E++ + ++ + D E G
Sbjct: 74 THNEDESHTNESLPSTDKKKKKDNDDFKQNLKSSSNKTEEKYSATQASKSKNDEFELGGE 133
Query: 225 IEEEQVP 245
E+++P
Sbjct: 134 ENEDEMP 140
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 119 FLYILLPSFFWCCFLYFTILILSICVTGSF 30
F + LP FFW +Y+T+ I + G +
Sbjct: 80 FFMLALPIFFWSGCIYYTLDITQLFAAGVY 109
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 543 KKKETKSRKNQGKKVAAKEETDDAVREDEPXS 638
K K+ K + + A+KEE ++ VREDE S
Sbjct: 528 KNKKGKHTQIEDPTAASKEELENLVREDENDS 559
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 15 TKRGRKAAGDTNGQDENGKIEETAPK 92
+K K+ GDT+ D N K E TA K
Sbjct: 886 SKSKEKSGGDTSALDSNAKNEPTAAK 911
>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 36 AGDTNGQDENGKIEETAPKKGRKKNV 113
AG + + +G IE+ APK+ +K+N+
Sbjct: 203 AGTSKPVNNHGSIEQDAPKQTKKRNL 228
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 26.2 bits (55), Expect = 5.6
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Frame = +3
Query: 45 TNGQDENGKIEETAPKKGRKKNV-------EEPPVENKSTDEPSVEDEVAVSEENNPSED 203
TN + I+ PKK KKN E+P ++ D S + E + +N SE+
Sbjct: 196 TNESEITPNIKVLPPKK--KKNASWGKMLNEDPEYDSAEEDYLSTDSEEFSEDSDNSSEE 253
Query: 204 GSETN 218
+TN
Sbjct: 254 NKDTN 258
>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 898
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 122 RFLYILLPSFFWCCFLYFTI 63
R +YILL + WC FL+ I
Sbjct: 222 RAVYILLLALGWCLFLFIAI 241
>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 386
Score = 21.8 bits (44), Expect(2) = 9.6
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = +3
Query: 69 KIEETAPKKGRKKNVEEPPVENKSTDEPSVEDEVAVSEENNPSEDGSE 212
+I E +GR + E +E + +E E+E A S+ P E
Sbjct: 324 EIREVFSTRGRGELDELDDMEELTDEEEEDEEEEAESQSPEPETSEEE 371
Score = 21.8 bits (44), Expect(2) = 9.6
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +3
Query: 291 PEPRTGRGRKPKQEIEDEV 347
PEP T K +E+ DE+
Sbjct: 363 PEPETSEEEKEDKELADEL 381
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 9.8
Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Frame = +3
Query: 111 VEEPPVENKSTDE-----PSVED--EVAVSEENNPSEDGSETNGHIEEEQVPSGRGRXXX 269
V+E E + +DE P+ ED E +E + E SE N EE+++ S +
Sbjct: 123 VDEEDEEEEESDEDYDLSPTEEDLVETVSGDEESEEESESEDNSASEEDELDSAPAKKAQ 182
Query: 270 XXXXXXXPEPRTGRGRKPKQ 329
E PK+
Sbjct: 183 VKKKRTKDESEQEEAASPKK 202
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 25.4 bits (53), Expect = 9.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 138 STDEPSVEDEVAVSEENNPSEDGSETN 218
S +P+ + + EN+ S DGSETN
Sbjct: 631 SETQPAPKQNINEEFENSTSTDGSETN 657
>SPAC6G9.03c |mug183||histone chaperone
Rtt106-like|Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 25.4 bits (53), Expect = 9.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 183 ENNPSEDGSETNGHIEEE 236
EN+ SEDGSE+ G +EE
Sbjct: 335 ENSDSEDGSESIGSEDEE 352
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,983,905
Number of Sequences: 5004
Number of extensions: 30827
Number of successful extensions: 225
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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