Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A14
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|...    83   6e-17
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe...    28   1.4  
SPAC4C5.01 |||haloacid dehalogenase-like hydrolase |Schizosaccha...    28   1.4  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    28   1.9  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    27   2.5  
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    27   2.5  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    27   4.4  
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    26   5.8  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    26   5.8  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    26   5.8  
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces...    26   5.8  

>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 342

 Score = 82.6 bits (195), Expect = 6e-17
 Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 1/149 (0%)
 Frame = +2

Query: 32  KWYFTKEQLQNSPSRKCGLDADKELAYRQQAANLIQDMGQRLQVSQLCINTAIVYMHRFY 211
           +W  +K+QL  +PS   G+  D+E   R +  N I ++G RL++ Q  + TA +Y HRFY
Sbjct: 17  QWIISKDQLVFTPSALDGIPLDQEEIQRSKGCNFIINVGLRLKLPQTALATANIYFHRFY 76

Query: 212 AFHSFTQFHRNXXXXXXXXXXXKVEEQPRKL-EYVIKVAHVCLHRGEGVNALTPEQYQEQ 388
              S   +H             KVE+  RKL + VI  A V       +     ++Y   
Sbjct: 77  LRFSLKNYHYYEVAATCIFLATKVEDSVRKLRDIVINCAKVAQKNSNVLVDEQTKEYWRW 136

Query: 389 AQDLVFNENVLLQTLGFDVAIDHPHTHVV 475
              +++ E VLL+ L FD  ++HP+ +V+
Sbjct: 137 RDVILYTEEVLLEALCFDFTVEHPYPYVL 165


>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 540 NSLHLTTMCLQYXPTVVACFCIHLASKWSNWLIPQSY 650
           N    T +C+ Y P  +AC CI +A++     +P+ +
Sbjct: 180 NDASRTRLCVLYPPFSLACGCIAMAARVIGMKLPKDW 216


>SPAC4C5.01 |||haloacid dehalogenase-like hydrolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 246

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 422 LQTLGFDVAI-DHPHTHVVRTCHLXKSDQRFGSNII 526
           L   G D+ +  HP+  +++T HL    ++FG N+I
Sbjct: 103 LSNHGIDIGVCTHPYA-IIKTAHLKHIFEKFGKNVI 137


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 21/63 (33%), Positives = 32/63 (50%)
 Frame = +1

Query: 19  WWARKMVFYKRTATEFTKQKMRFRCR*RVSLSAAGRESNTGYGTEASSLSTMYQHGDSVH 198
           +WA+      RTA  FT+ +  +R R RV+  A   + +T     ASSLS+  +   S H
Sbjct: 459 FWAQPAKTQFRTA--FTRSR-EWRRRYRVAPPAENEKPHTSRTNTASSLSSTSEDQVSTH 515

Query: 199 ASV 207
            S+
Sbjct: 516 GSI 518


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 661 WRPSYDCGISQLLHLEA 611
           WR SYD GI  LLH+++
Sbjct: 137 WRISYDAGIGFLLHMQS 153


>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 959

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 317 KVAHVCLHRGEGVNALTPEQYQEQ 388
           KVAH CL   E +  LTP+++ ++
Sbjct: 893 KVAHACLVSPEAMKKLTPQEWSQK 916


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 145 GTEASSLSTMYQHGDSVHASVL 210
           G E SSLS +  H +++HA +L
Sbjct: 432 GPEYSSLSAILDHSNNIHAEIL 453


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 5   SVQWLGGQEKWYFTKEQLQNSPSRKCGLDADK 100
           +V +  G   W FT  Q  N  ++K G+D +K
Sbjct: 208 TVAFASGLHGWAFTVRQFANRYAKKFGIDRNK 239


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 5   SVQWLGGQEKWYFTKEQLQNSPSRKCGLDADK 100
           +V +  G   W FT  Q  N  ++K G+D +K
Sbjct: 208 TVAFASGLHGWAFTVRQFANRYAKKFGIDRNK 239


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/38 (26%), Positives = 24/38 (63%)
 Frame = +1

Query: 103  VSLSAAGRESNTGYGTEASSLSTMYQHGDSVHASVLRL 216
            ++++  G +SNTG G E  + S    +GD++ +++ ++
Sbjct: 963  IAMNRLGGKSNTGEGGEDPARSQRLANGDTMRSAIKQI 1000


>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 133 NTGYGTEASSLSTMYQHGDSVHASVLRLPFVHTVS 237
           ++GY  E    +  +++ D + ASVL +P V  +S
Sbjct: 485 DSGYNMEKGFFAQSFENNDILDASVLVMPLVSFIS 519


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,254,347
Number of Sequences: 5004
Number of extensions: 67728
Number of successful extensions: 167
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)