Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_A14
(843 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0362 + 17998110-17998345,17998877-17998958,18000309-180003... 67 3e-20
11_01_0357 + 2715271-2715509,2716200-2716281,2717117-2717251,271... 95 8e-20
02_01_0262 - 1734447-1735090,1735219-1735367,1735458-1735633,173... 82 6e-16
02_03_0032 + 14112354-14112417,14112471-14112549,14114435-141145... 77 2e-14
01_04_0064 - 15600467-15600528,15600606-15600647,15600732-156011... 54 1e-07
01_07_0118 + 41176159-41178909 30 2.0
01_06_0289 + 28233327-28233815 29 3.5
>12_02_0362 +
17998110-17998345,17998877-17998958,18000309-18000392,
18000600-18000734,18001395-18001570,18001654-18001805,
18003730-18004575,18004961-18005301
Length = 683
Score = 66.9 bits (156), Expect(2) = 3e-20
Identities = 31/70 (44%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Frame = +2
Query: 35 WYFTKEQLQ-NSPSRKCGLDADKELAYRQQAANLIQDMGQRLQVSQLCINTAIVYMHRFY 211
WYF++++++ NSPSR+ G+D KE R+ +QD+G RL+V Q+ I TAIV+ HRFY
Sbjct: 36 WYFSRKEIEENSPSRRDGIDLKKESYLRKSYCTFLQDLGMRLKVPQVTIATAIVFCHRFY 95
Query: 212 AFHSFTQFHR 241
S + R
Sbjct: 96 LRQSHAKNDR 105
Score = 50.0 bits (114), Expect(2) = 3e-20
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Frame = +2
Query: 278 KVEEQPRKLEYVIKVAHVCLHRGE---GVNALTPEQYQEQAQDLVFNENVLLQTLGFDVA 448
KVEE PR L+ VI V++ +H+ + G E Y +Q + ++ E V+L TLGFD+
Sbjct: 146 KVEETPRPLKDVILVSYEIIHKKDPAAGQRIKQKEVYDQQKELILLAERVVLATLGFDLN 205
Query: 449 IDHPHTHVVRTCHLXKSDQ 505
+ HP+ +V K Q
Sbjct: 206 VHHPYKPLVEAIRKFKVAQ 224
Score = 35.5 bits (78), Expect = 0.053
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +3
Query: 459 PTRTLCERVTLXKATKD-LAQTSYFMASNSLHLTTMCLQYXPTVVACFCIHLASKWSNWL 635
P + L E + K ++ LAQ ++ ++ L T++CLQ+ P +A I LA+K+
Sbjct: 209 PYKPLVEAIRKFKVAQNALAQVAWNFVNDGLR-TSLCLQFKPHHIAAGAIFLAAKFLKVK 267
Query: 636 IPQSYEGRHWFSYVDKT 686
+P E + W+ D T
Sbjct: 268 LPSDGE-KVWWQEFDVT 283
>11_01_0357 +
2715271-2715509,2716200-2716281,2717117-2717251,
2717428-2717457,2717486-2717661,2717743-2717894,
2718395-2719083
Length = 500
Score = 94.7 bits (225), Expect = 8e-20
Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 16/178 (8%)
Frame = +2
Query: 20 GGQ--EKWYFTKEQLQ-NSPSRKCGLDADKELAYRQQAANLIQDMGQRLQVSQLCINTAI 190
GGQ WYF++++++ NS SR+ G+D KE R+ +QD+G RL+V Q+ I TAI
Sbjct: 30 GGQLGASWYFSRKEIEENSLSRRDGIDLKKESYLRKSYCTFLQDLGMRLKVPQVTIATAI 89
Query: 191 VYMHRFYAFHSFTQFHRNXXXXXXXXXXXKVEEQPRKLEYVIKVAHVCLHRGEGVNALTP 370
V+ HRF+ S + R KVEE PR L+ VI +++ +H+ +
Sbjct: 90 VFCHRFFLRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVILISYEIIHKKDAAAVQRI 149
Query: 371 EQ-------------YQEQAQDLVFNENVLLQTLGFDVAIDHPHTHVVRTCHLXKSDQ 505
+Q Y++Q + ++ E V+L TLGFD+ + HP+ +V K Q
Sbjct: 150 KQKSLDYFGVEWQEVYEQQKELILLGERVVLVTLGFDLNVHHPYKPLVEAIKKFKVAQ 207
Score = 35.5 bits (78), Expect = 0.053
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +3
Query: 459 PTRTLCERVTLXKATKD-LAQTSYFMASNSLHLTTMCLQYXPTVVACFCIHLASKWSNWL 635
P + L E + K ++ LAQ ++ ++ L T++CLQ+ P +A I LA+K+
Sbjct: 192 PYKPLVEAIKKFKVAQNALAQVAWNFVNDGLR-TSLCLQFKPHHIAAGAIFLAAKFLKVK 250
Query: 636 IPQSYEGRHWFSYVDKT 686
+P E + W+ D T
Sbjct: 251 LPSDGE-KVWWQEFDVT 266
>02_01_0262 -
1734447-1735090,1735219-1735367,1735458-1735633,
1735719-1735853,1737039-1737120,1737307-1737461
Length = 446
Score = 81.8 bits (193), Expect = 6e-16
Identities = 48/152 (31%), Positives = 80/152 (52%), Gaps = 4/152 (2%)
Frame = +2
Query: 20 GGQEKWYFTKEQLQN-SPSRKCGLDADKELAYRQQAANLIQDMGQRLQVSQLCINTAIVY 196
G WY T+++++ SPSR+ G+ A KE R + I+D+G RLQ+ Q+ I TA +
Sbjct: 4 GAAGSWYVTRDEVERGSPSRRDGVGAAKEAELRATYCSFIRDVGLRLQLPQVTIATATLL 63
Query: 197 MHRFYAFHSFTQFHRNXXXXXXXXXXXKVEEQPRKLEYVIKVAHVCLHRGE--GVNALTP 370
HRFY S + K+E+ P L+ VI VA+ ++R + + +
Sbjct: 64 CHRFYLRQSHAKNEWQTVATVCVFLASKIEDTPCPLQRVIIVAYETMYRKDCNAAHRIYQ 123
Query: 371 EQYQEQAQDLVF-NENVLLQTLGFDVAIDHPH 463
++ E+ ++L+ E +LL T+ FD I HP+
Sbjct: 124 KEVLEKQKELILVGETLLLSTIRFDFNIQHPY 155
>02_03_0032 +
14112354-14112417,14112471-14112549,14114435-14114551,
14114721-14114802,14115734-14115868,14115948-14116123,
14116219-14116370,14116433-14117622
Length = 664
Score = 77.0 bits (181), Expect = 2e-14
Identities = 47/142 (33%), Positives = 76/142 (53%), Gaps = 4/142 (2%)
Frame = +2
Query: 50 EQLQN-SPSRKCGLDADKELAYRQQAANLIQDMGQRLQVSQLCINTAIVYMHRFYAFHSF 226
E+L+ SPSRK G+ E RQ + I+D+G RL++ Q+ I TAI++ HRFY + S
Sbjct: 49 EELEKFSPSRKDGITEIMESEIRQLYCSFIRDVGIRLKLPQMTIATAIMFCHRFYLYQSL 108
Query: 227 TQFHRNXXXXXXXXXXXKVEEQPRKLEYVIKVAHVCLHRGEGVNALTPEQ---YQEQAQD 397
+ KVE+ P L+ VI+VA+ ++R + A Q +++Q
Sbjct: 109 AKNGWQTIATVCIFLASKVEDTPCPLDQVIRVAYGTMYRRDPATARRIHQKDVFEKQKAL 168
Query: 398 LVFNENVLLQTLGFDVAIDHPH 463
++ E ++L T+ FD I HP+
Sbjct: 169 ILTGERLVLTTVRFDFNIQHPY 190
Score = 37.5 bits (83), Expect = 0.013
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +3
Query: 459 PTRTLCERVT-LXKATKDLAQTSYFMASNSLHLTTMCLQYXPTVVACFCIHLASKWSNWL 635
P R L + + L + K++ Q ++ ++ L TT+CLQY P +A ++LA+K+ N
Sbjct: 189 PYRPLLDAMEKLGISQKEVKQVAWNFVNDWLK-TTLCLQYKPQYIAAGSLYLAAKFQNVK 247
Query: 636 IPQSYEGRHWFSYVD 680
+P + G W+ D
Sbjct: 248 LP-VHGGHVWWHQFD 261
>01_04_0064 -
15600467-15600528,15600606-15600647,15600732-15601107,
15601186-15601447,15602992-15603158,15603344-15603484,
15603575-15603643
Length = 372
Score = 54.0 bits (124), Expect = 1e-07
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Frame = +2
Query: 182 TAIVYMHRFYAFHSFTQFHRNXXXXXXXXXXXKVEEQPRKLEYVIKVAHVCLHRGEGVNA 361
TA V HRFY SF +F K+EE PR+ +++I V H R E V
Sbjct: 3 TAQVLFHRFYCKKSFVRFSVKRVAASCVWLAGKLEESPRRSKHIIIVFHRMECRRENVPI 62
Query: 362 ----LTPEQYQEQAQDLVFNENVLLQTLGFDVAIDHPHTHV 472
+ ++Y + DLV E LL+ +GF ++HPH +
Sbjct: 63 EHLDVFSKKYSDLKHDLVRTERHLLKEMGFICHVEHPHKFI 103
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/46 (30%), Positives = 30/46 (65%)
Frame = +3
Query: 507 DLAQTSYFMASNSLHLTTMCLQYXPTVVACFCIHLASKWSNWLIPQ 644
+L Q ++ +A++SL TT+C+++ VVAC ++ A++ +P+
Sbjct: 114 ELTQEAWNLANDSLR-TTLCVRFKSEVVACGVVYAAARRHGVPLPE 158
>01_07_0118 + 41176159-41178909
Length = 916
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 157 SSLSTMYQHGDSVHASVLRLPFVHTVSQECHSCSSF 264
S L ++ G+SVH+SV++L + T S +S +F
Sbjct: 276 SHLKDLFSFGESVHSSVIKLGYEDTTSSVANSLITF 311
>01_06_0289 + 28233327-28233815
Length = 162
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +2
Query: 341 RGEGVNALTPEQYQEQAQDLVFNENVLLQTLGFDVAIDHPHTHVVRTCHLXKSDQRFGS 517
RGE + E+Y Q +D ENV+ + + + H + + R+C L +GS
Sbjct: 14 RGEWDGLVPGEEYSSQIRDQPIRENVVDELVPGGTSERHDNAFLPRSCCLPSGAAAYGS 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,448,807
Number of Sequences: 37544
Number of extensions: 485730
Number of successful extensions: 1263
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -