Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A14
         (843 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   1.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   8.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   8.1  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 585 PSXCTANTLLSNGDCLMP*NMMFEPNLWS 499
           P+    NTL+SNGD +   NM     +W+
Sbjct: 32  PNDNIRNTLISNGDYIEENNMPNGMQIWN 60


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 220 MEGVEPMHVHYRRVDT*LRDLKPLSH 143
           M  +EP  + Y +++T L   KP ++
Sbjct: 568 MNDLEPSEIFYEKIETSLNSDKPFTY 593


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 220 MEGVEPMHVHYRRVDT*LRDLKPLSH 143
           M  +EP  + Y +++T L   KP ++
Sbjct: 568 MNDLEPSEIFYEKIETSLNSDKPFTY 593


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = +1

Query: 214 LPFVHTVSQECHSCSSFVPGCEGGRAAKEAGI 309
           LP+V  + Q       F   CEG  A    G+
Sbjct: 44  LPYVEIIEQPASKALRFRYECEGRSAGSIPGV 75


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = +1

Query: 214 LPFVHTVSQECHSCSSFVPGCEGGRAAKEAGI 309
           LP+V  + Q       F   CEG  A    G+
Sbjct: 44  LPYVEIIEQPASKALRFRYECEGRSAGSIPGV 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,935
Number of Sequences: 438
Number of extensions: 5158
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)