Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A13
         (869 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g30590.1 68415.m03727 WRKY family transcription factor              30   2.3  
At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative...    29   5.3  
At1g70610.1 68414.m08135 ABC transporter (TAP1) contains Pfam pr...    28   9.3  

>At2g30590.1 68415.m03727 WRKY family transcription factor
          Length = 380

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 482 LGTRKLGPLEGYSRAAATCSSSTWCHCAGGRR 387
           L +++  PL+G    +  C SS+ CHCA  R+
Sbjct: 261 LHSKRKCPLKGDEHGSLKCGSSSRCHCAKKRK 292


>At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative
           (UBP5) similar to GI:6648604
          Length = 924

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 177 PTSFNRSRAARITVFGCNFVMLDTLSLINI 88
           P  FN +RA  +TVF C+   L +   +N+
Sbjct: 494 PLQFNTTRAITVTVFSCDKTALPSTITVNV 523


>At1g70610.1 68414.m08135 ABC transporter (TAP1) contains Pfam
           profile: PF00005 ABC transporters; similar to TAP1
           protein (transporter of processed antigen) GB:AAD53033
           (Oncorhynchus mykiss); identical to cDNA transporter
           associated with antigen processing-like protein (TAP1)
           GI:19335721
          Length = 700

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = -2

Query: 172 LVQQVQGGTDHCIRLQLCHA*HFITDKHNMSTNLSVIKNPRQQQWISHSARGFR 11
           + QQV G T   IR+ L       T       NL  ++NPR    +  S R +R
Sbjct: 1   MAQQVLGCTSRPIRVSLHRCSVITTSDTIRRKNLRFVRNPRLSFSLQSSTRNYR 54


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,487,260
Number of Sequences: 28952
Number of extensions: 294292
Number of successful extensions: 673
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2038669600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)