Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A10
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    29   0.63 
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    27   2.5  
SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual      26   7.8  

>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 687 CKLPVQAFFSLVVSNDHRYSCEDCG 613
           C++ +  F S+ + N HRY C  CG
Sbjct: 259 CRMYINPF-SIFIDNGHRYRCNSCG 282


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = -1

Query: 318 GWITGKKFQSDSHNISKTQFNSLTAVSRSNVTMN*IKLIITIICCYRLIAHITV 157
           GWI  +      HN S T  +  +A+  SNV +N   ++I++   Y +   +++
Sbjct: 631 GWIAYRAISDAIHNASSTSSSYTSALLNSNVFIN---IVISLSSTYGMYLVVSI 681


>SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 694 GIV*TSCSGFFFTSRFQR 641
           G++ TS  GFFF  RF+R
Sbjct: 15  GLITTSIGGFFFLRRFRR 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,822,366
Number of Sequences: 5004
Number of extensions: 48768
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)