Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A10
         (849 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25599-1|AAA28053.1|  343|Caenorhabditis elegans Hypothetical pr...    29   5.5  
AF002198-8|AAF99931.2|  300|Caenorhabditis elegans Serpentine re...    28   7.3  

>L25599-1|AAA28053.1|  343|Caenorhabditis elegans Hypothetical
           protein F54H12.4 protein.
          Length = 343

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/55 (25%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
 Frame = +3

Query: 570 QDNLMQPHGNERASFRSLRKNIGGRWKRLVKKKP--EQEVYTIPPELKPQLKQIY 728
           Q+NL Q + N++ + +  R+N+  +++ + +K+   +++ YT PP  K + +Q++
Sbjct: 68  QENLQQQNDNQKRNVKLERRNL--KYEVIPEKRESYQEKDYTNPPVYKAENEQLF 120


>AF002198-8|AAF99931.2|  300|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 3 protein.
          Length = 300

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = -2

Query: 752 SLLERLINVYLLKLWLELRRDRVNFLFRLF 663
           S+   ++NVY +K+ ++ R++ + F +RLF
Sbjct: 25  SVYTTVMNVYFIKMTVKTRKNMILFFYRLF 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,922,568
Number of Sequences: 27780
Number of extensions: 287266
Number of successful extensions: 918
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)