Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A10
         (849 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM dom...    28   6.8  
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t...    28   9.0  

>At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM
            domain-containing protein contains Pfam profiles PF00168:
            C2 domain; contains PF02893: GRAM domain; similar to
            Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
            Length(GI:6980525); similar to Synaptotagmin III (SytIII)
            (Swiss-Prot:P40748) [Rattus norvegicus]
          Length = 1859

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +3

Query: 564  HDQDNLMQPHGNERASFRSLRKNIGGRWKRLVKKKPEQEVYTIPPELKPQLK 719
            HD++  ++ H +   SF   +K I   WK      PEQ+V  +  E + +L+
Sbjct: 1623 HDEEGRLKFHFHSFVSFNVAQKTIMALWK-AKSLTPEQKVQAVEEESEQKLQ 1673


>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
           RNA-binding protein GB:AAA86641 GI:1174153 from
           [Arabidopsis thaliana]
          Length = 314

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -1

Query: 186 CYRLIAHITVRRNAREDRVTRAFSCAIGD*NFIEKCGRQVPSKALA 49
           C R I    V +NA ED V   F  A G+   +   G QV S  +A
Sbjct: 223 CSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVHSTRIA 268


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,004,825
Number of Sequences: 28952
Number of extensions: 264679
Number of successful extensions: 668
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)