Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A09
         (809 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.47 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   1.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   1.1  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    24   1.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.4  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   2.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   3.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.4  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   5.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.8  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   5.8  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   5.8  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   5.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
 Frame = +2

Query: 584 TYRASWATSGARCPPP-----PSRAGRSEPRAATRRPPPGSPTRCASWRNTQQ 727
           T ++   +SGA  P P     P    R  P   ++ PPPG P      +N  Q
Sbjct: 10  TQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQ 62


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +2

Query: 557  PTTRRLHSATYRASWATSGARCPPPPSRAGRS 652
            P    LHS  Y     T G   PPP + + +S
Sbjct: 1732 PNNTLLHSFMYHEHAMTEGCASPPPAATSMKS 1763


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +2

Query: 557  PTTRRLHSATYRASWATSGARCPPPPSRAGRS 652
            P    LHS  Y     T G   PPP + + +S
Sbjct: 1728 PNNTLLHSFMYHEHAMTEGCASPPPAATSMKS 1759


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 345 GRLVFGLAGDTSVNRW 392
           G L FGL GDTS+  W
Sbjct: 313 GVLFFGLVGDTSLACW 328


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -2

Query: 388 LLTEVSPARPKTSRPTNSL 332
           LL   SPA   TS PTNSL
Sbjct: 920 LLERASPAFSGTSSPTNSL 938


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 345 GRLVFGLAGDTSVNRWQ*QPLQPVPERNAQ 434
           G L FGL  DT++  W     +P+  RN +
Sbjct: 312 GALFFGLVSDTALGCW--NENRPLKRRNIE 339


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +2

Query: 599 WATSGARCPPPPSRAGRSEPRAATRR 676
           W  S   C PPP +   S   +  RR
Sbjct: 385 WQMSCVACSPPPRQTPPSRKESGRRR 410


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = +2

Query: 620 CPPPPSRAGRSEPRAATRRPPPGSPTR 700
           CP PP    R   +    R PP  P R
Sbjct: 618 CPSPPVTTKRDGTQETEERLPPLPPKR 644


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 617  RCPPPPSRAGRSE 655
            RCPPPP R G +E
Sbjct: 1700 RCPPPP-RMGSAE 1711


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 345 GRLVFGLAGDTSVNRW 392
           G L FGL GD+++  W
Sbjct: 315 GVLFFGLVGDSALGCW 330


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +2

Query: 575  HSATYRASWATSGARCPPPPSRAGRS 652
            +S   R +W       PPPP  +G++
Sbjct: 1342 YSTLERTAWRQQQPPPPPPPPSSGQA 1367


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 11/38 (28%), Positives = 14/38 (36%)
 Frame = +1

Query: 607 EWRSLPAATKQSWEERAARCNEETAARLADEMRELAQH 720
           EW    A     W+ R +   E    R  + MR  A H
Sbjct: 573 EWEPPRALWPTEWKVRPSTVEEREEFRRQERMRYAAPH 610


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 379 LSTGGNSNPYNPSLSVTPS 435
           L  GG++ P +P+LS  P+
Sbjct: 18  LKGGGSTTPASPTLSTPPT 36


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 345 GRLVFGLAGDTSVNRW 392
           G L FGL GD+++  W
Sbjct: 315 GVLFFGLVGDSALGCW 330


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 345 GRLVFGLAGDTSVNRW 392
           G L FGL GD+++  W
Sbjct: 315 GVLFFGLVGDSALGCW 330


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.127    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,989
Number of Sequences: 438
Number of extensions: 3873
Number of successful extensions: 18
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)