Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_A05
(840 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g42530.1 68416.m04410 Ulp1 protease family similar to At5g281... 33 0.18
At1g76280.1 68414.m08858 pentatricopeptide (PPR) repeat-containi... 30 1.7
At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi... 29 2.9
At5g05240.1 68418.m00560 expressed protein similar to unknown pr... 29 3.8
At5g48320.1 68418.m05969 DC1 domain-containing protein contains ... 29 5.1
At5g07225.1 68418.m00824 zinc finger (C3HC4-type RING finger) fa... 28 6.7
At4g28960.1 68417.m04137 hypothetical protein contains Pfam prof... 28 6.7
At4g16144.1 68417.m02448 expressed protein 28 6.7
At4g09680.1 68417.m01590 expressed protein 28 8.9
At2g25270.1 68415.m03023 expressed protein 28 8.9
At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex... 28 8.9
>At3g42530.1 68416.m04410 Ulp1 protease family similar to At5g28170,
At1g35110, At1g44880, At4g19320, At5g36020, At4g03970,
At3g43010, At2g10350; contains Pfam profile PF02902:
Ulp1 protease family, C-terminal catalytic domain
Length = 889
Score = 33.5 bits (73), Expect = 0.18
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +1
Query: 175 SDEPKVDTSKSKLSADAKEWYPANYTSQALPA-YNTEPAPYRPSRPSVQGRLRQAQDQNP 351
S E + + + ADA E PA ++ LP +N+E + V G+L+ + D+ P
Sbjct: 615 SVEKLLPLHQDHIIADASERVPATHSGLDLPKEHNSEELQTNANETDVYGKLQDSLDREP 674
Query: 352 YNLDDMSYSLEEA 390
+ D+ +E++
Sbjct: 675 ASHSDIDLPIEQS 687
>At1g76280.1 68414.m08858 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 773
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/98 (22%), Positives = 49/98 (50%)
Frame = +1
Query: 352 YNLDDMSYSLEEAENMDLRENIANLITVMCEITFDPGKFDTLCGPLVDSFASTLNDESYT 531
++ +D+ ++ +++N +L E + + VM + P +D+ + + L +
Sbjct: 334 WSFNDVIHACGQSKNSELAEQLMLQLKVMQQQNLKP--YDSTLATVAAYCSKALQVD--- 388
Query: 532 RPLVDAIVNQSIGEANFRYNGARLCSMYDSVAQPEESV 645
L + +++Q I E ++ Y L + YDS+ QPE +V
Sbjct: 389 --LAEHLLDQ-ISECSYSYPFNNLLAAYDSLDQPERAV 423
>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
protein contains similarity to 67kD chloroplastic
RNA-binding protein, P67.1 [Raphanus sativus]
GI:9755886; contains Pfam profile PF01535: PPR repeat
Length = 711
Score = 29.5 bits (63), Expect = 2.9
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 7/128 (5%)
Frame = +1
Query: 115 RGRGWQMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPA-- 288
+ R ++N L++PK + +EP + T LS K A Q ++P
Sbjct: 34 QSRSRKLNISCSSLKQPKTLEEEP-ITTKTPSLSEQLKP-LSATTLRQEQTQILSKPKSV 91
Query: 289 ---PYRPSRP--SVQGRLRQAQDQNPYNLDDMSYSLEEAENMDLRENIANLITVMCEITF 453
P RP R S+Q + R A NP D +++L+ N + + ++++ EI
Sbjct: 92 WVNPTRPKRSVLSLQRQKRSAYSYNPQIKDLRAFALK--LNSSIFTEKSEFLSLLDEIPH 149
Query: 454 DPGKFDTL 477
P + + L
Sbjct: 150 PPNRDNAL 157
>At5g05240.1 68418.m00560 expressed protein similar to unknown
protein (gb AAD32815.2)
Length = 530
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 73 IVKMNNGDISAPKGRGRGWQMNNQARELRRPKAVSDEPKVD 195
++ ++G I APK RGR ++NN A ++ K + + +VD
Sbjct: 186 LISSSHGGIPAPKKRGRKTKINNDAAVAKKRK-IERKEEVD 225
>At5g48320.1 68418.m05969 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 977
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = -3
Query: 481 HTRCQTCPGQRLSHT*QLSSLLCSPVDP--CFQLLQVNKTCHPNCMDFDLELDEVYLVQR 308
H RCQTC G+ + ++ + P QL+ +N C D +L+EV+
Sbjct: 462 HIRCQTCNGENHGEYEKAPVVIKHTLHPKHSLQLVLLNGDTTRECYCCDKDLEEVF-YYC 520
Query: 307 GEMVYMGQVQCCKR 266
Y + C KR
Sbjct: 521 SACDYAMNIACIKR 534
>At5g07225.1 68418.m00824 zinc finger (C3HC4-type RING finger)
family protein similar to SP:O54965 RING finger protein
13 {Mus musculus} RING zinc finger protein
Length = 234
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +1
Query: 289 PYRPSRPSVQGRLRQAQDQNPYNLDDMSYSLEEAE--NMDLRENIA-NLITVMCEITFDP 459
PY S S G + N ++LD++ +EE E N + E + I+ + I F P
Sbjct: 122 PYNDSPHSFSGYEHLEDESNQHSLDEIIERIEERERGNTSVGEGLTEGQISQLPTIKFKP 181
Query: 460 GKFDTLC 480
D +C
Sbjct: 182 SLEDKMC 188
>At4g28960.1 68417.m04137 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 493
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = -1
Query: 399 HVFSFFK*IRHVIQIVWILILSLTKSTLYRGARWSIWG---RFSVVSG*RLRSVICRV 235
H+F K H+IQ +W+L++ K+ L R + + G R+S+ L + CRV
Sbjct: 160 HIFHMPKEPNHMIQGMWMLMVRTAKTELARECWFVVNGVPIRYSIREHALLTGLNCRV 217
>At4g16144.1 68417.m02448 expressed protein
Length = 390
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +1
Query: 130 QMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPYRPSRP 309
+ N +L R + S + D S+DA EW PA+ S + P N +P P S+P
Sbjct: 95 EFNQLVDKLNRVEDESRQDGSDLPVVSYSSDAVEWPPAHKASYSRPDIN-KPLP--TSQP 151
Query: 310 S 312
S
Sbjct: 152 S 152
>At4g09680.1 68417.m01590 expressed protein
Length = 1075
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +2
Query: 503 LQHLMMKAIPDPWWMPLLISQSAKLISGTMELVCVQCTIQWRNLRSLYSASAC 661
L+ L++ AI P W S K+I CV+ NL+S++ C
Sbjct: 1005 LKWLILNAISGPIWEVAASSMDMKMIEHLEREQCVEMETSRYNLQSVWGNEVC 1057
>At2g25270.1 68415.m03023 expressed protein
Length = 545
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 623 WRNLRSLYSASACSSAVPLRKTRLSAAWKLXRKICVDLLCXC 748
W Y AS +AVPL L+A W L IC+ ++C C
Sbjct: 93 WNISNQHYWASVSYTAVPLFV--LAAVWFLGFGICLLVICMC 132
>At1g12040.1 68414.m01390 leucine-rich repeat family protein /
extensin family protein (LRX1) similar to extensin-like
protein [Lycopersicon esculentum]
gi|5917664|gb|AAD55979; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 744
Score = 27.9 bits (59), Expect = 8.9
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = +1
Query: 127 WQMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYP----ANYTSQALPAYNTEPAPY 294
++M+ + R L P V P S SK+S + + P ++ S ++ AY+ P PY
Sbjct: 388 FKMSPEVRTLPPPIYVYSSPPPPPS-SKMSPTVRAYSPPPPPSSKMSPSVRAYSPPPPPY 446
Query: 295 RPSRPSVQ 318
PSV+
Sbjct: 447 SKMSPSVR 454
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,968,046
Number of Sequences: 28952
Number of extensions: 391979
Number of successful extensions: 1107
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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