Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A04
         (848 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein...    28   9.0  
At5g10440.1 68418.m01210 cyclin family protein similar to cyclin...    28   9.0  

>At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 415

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/73 (21%), Positives = 28/73 (38%)
 Frame = +3

Query: 507 DVPQGSTAPQRTARHGRYSRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFTCEQTRCYYY 686
           D P  S   + +            +++G + +   T H +P+  G    F C Q     Y
Sbjct: 252 DQPTNSALSKLSVDEAMSDLIRDTVSSGSVVIHGRTNHEQPEIDGAEWSFPCLQNLIDQY 311

Query: 687 NYGSIPVSSXAGK 725
           N   + + S +GK
Sbjct: 312 NSEKLQLESISGK 324


>At5g10440.1 68418.m01210 cyclin family protein similar to cyclin
           D2.1 protein [Nicotiana tabacum] GI:4160298; contains
           Pfam profile PF00134: Cyclin, N-terminal domain
          Length = 298

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
 Frame = +3

Query: 195 VQYFISRMNPYSPELNYFL---SYQYCRSL--GLQLASFETKEKADSITTYLTNAGYNKY 359
           V+YF+S++N Y  E +  L   S Q   S   G+    F   E A ++   ++   ++K+
Sbjct: 177 VRYFLSKINGYDQEPHSRLVTRSLQVIASTTKGIDFLEFRASEIAAAVALSVSGEHFDKF 236

Query: 360 DFWTSGNNL 386
            F +S ++L
Sbjct: 237 SFSSSFSSL 245


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,010,440
Number of Sequences: 28952
Number of extensions: 358116
Number of successful extensions: 906
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)