Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A03
         (810 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    23   3.8  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           23   3.8  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   3.8  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   3.8  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    23   3.8  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    23   3.8  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   5.0  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   6.6  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   6.6  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 12  GKILPRQYFLGPPSLSENSNHGGRGTLHLS 101
           GK  PR+ +  PP     S+   RG L+ S
Sbjct: 117 GKWCPRREWSSPPDARAASDAARRGVLYSS 146


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 151 TDVKVAPNFVFGETNKSED 207
           ++  ++P+ VFG+  KSED
Sbjct: 201 SEQSLSPDTVFGDDGKSED 219


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 248 SNAGTFPAGNFFKKSSDL 195
           S  GT+P+ N++  +SD+
Sbjct: 12  SQHGTYPSDNYYNYTSDI 29


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 12  GKILPRQYFLGPPSLSENSNHGGRGTLHLS 101
           GK  PR+ +  PP     S+   RG L+ S
Sbjct: 273 GKWCPRREWSSPPDARAASDAARRGVLYSS 302


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 248 SNAGTFPAGNFFKKSSDL 195
           S  GT+P+ N++  +SD+
Sbjct: 12  SQHGTYPSDNYYNYTSDI 29


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 248 SNAGTFPAGNFFKKSSDL 195
           S  GT+P+ N++  +SD+
Sbjct: 12  SQHGTYPSDNYYNYTSDI 29


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = -1

Query: 600 GSSTCWKACSSVT 562
           G  TCW+ C   T
Sbjct: 881 GKPTCWRECDKAT 893



 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -1

Query: 717 SYVGGAAQSVSEPTTADTCGWWATV 643
           S  GG   S+ +  T   CG W  +
Sbjct: 211 SRAGGLVNSLYQNATRKVCGVWKRI 235


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 493 DGHLLTRTFLVTERITLADVIVFS 564
           DGH++  TF  +E   + DV++ +
Sbjct: 624 DGHVILETFHFSEADFVMDVVMLA 647


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 493 DGHLLTRTFLVTERITLADVIVFS 564
           DGH++  TF  +E   + DV++ +
Sbjct: 624 DGHVILETFHFSEADFVMDVVMLA 647


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,180
Number of Sequences: 336
Number of extensions: 4512
Number of successful extensions: 20
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22102797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)