Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_A03
(810 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 60 4e-10
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po... 47 3e-06
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ... 30 0.34
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 28 1.4
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S... 28 1.8
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 27 3.2
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ... 27 3.2
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 27 4.2
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 27 4.2
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 26 5.5
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 26 5.5
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 26 7.3
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch... 25 9.6
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 60.1 bits (139), Expect = 4e-10
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Frame = +1
Query: 193 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN----ESLRGGDLATQARVWQW 360
N D KFP K+P F DG L+E+ AIA+Y+A+ +L G +A+V Q+
Sbjct: 38 NFPADLAAKFPLQKMPVFVGKDG-FPLSETLAIAFYLASLNKTRALNGTTAEEKAKVLQY 96
Query: 361 ASWSDSELLPASCAWVFPYLGIMQFNKQNVERAMSDLLAALKVLDGHLLTRTFLVTERIT 540
S+++SEL A + P + +++Q + A + + D L ++T+LV R+T
Sbjct: 97 CSFTNSELPGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTYLVGSRLT 156
Query: 541 LADV 552
LAD+
Sbjct: 157 LADI 160
>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 220
Score = 47.2 bits (107), Expect = 3e-06
Identities = 41/168 (24%), Positives = 75/168 (44%), Gaps = 8/168 (4%)
Frame = +1
Query: 73 MAAGVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFES 252
M G LY++ N R L A+ V + + S D KFP K+P F
Sbjct: 1 MFLGTLYSFKTNTRTVCLLELAKLLDLQVDLVETYPH---KFSADLAAKFPLQKLPVFIG 57
Query: 253 ADGKVLLTESNAIAYYVAN------ESLRGGDLATQARVWQWASWSDSELL-PASCA-WV 408
ADG L + Y+ E L + +A + +W + + +++ P + WV
Sbjct: 58 ADGFELSEVIAIVKYFYEKGKHNDKEGLGPVNEVEEAEMLKWMCFINFDIVTPQNVRPWV 117
Query: 409 FPYLGIMQFNKQNVERAMSDLLAALKVLDGHLLTRTFLVTERITLADV 552
+ G + + ++ + + + + +LK+ + + RT+LV +R TLAD+
Sbjct: 118 GMFRGNIPYEEKPFKESATRAIDSLKIPNELVKDRTYLVGDRFTLADL 165
>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 501
Score = 30.3 bits (65), Expect = 0.34
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -3
Query: 808 LLGCSLFSHXXSFXPSFLFCAPANSWYFLRVVC 710
LL ++FS F FL+ APA Y LRV C
Sbjct: 176 LLSAAIFSALICFKHIFLYVAPAYFVYLLRVYC 208
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 467 TYWPP*KYWTDIFSHAPSLLPRESHLPMSLS 559
TY PP Y D+FS APS+ + S+S
Sbjct: 257 TYLPPFNYDHDVFSFAPSVASADQFTESSMS 287
>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 91 KVPRPPWLEFSEREGGPRKYWRGRILPF 8
K+P P LE++ GPRK W G+I F
Sbjct: 493 KIPHPNGLEYTLE--GPRKNWTGKIPMF 518
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.1 bits (57), Expect = 3.2
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +1
Query: 100 PENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTE 279
P F++ KA + QY+ +FG +K ++F K+ ++ F S + +L+
Sbjct: 553 PNYFKSLKAELNRQYAAAVNSGTRPLLFGSLSKYQNFTKEKLESEIVRF-SFEHSILINT 611
Query: 280 SN 285
SN
Sbjct: 612 SN 613
>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 267
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 329 IWLPKPVSGSGHHGLTANYCL-LPALGSSLTLV 424
+W+P PV SG T C+ LP G +T V
Sbjct: 23 LWVPTPVGRSGRKHRTLKMCIVLPDTGYDVTQV 55
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +2
Query: 497 DIFSHAPSLLPRESHLPMS-LSSVTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQVSA 673
D F + + + ++S + ++ L+ +H++ L L NV RWF + HQ V
Sbjct: 129 DEFLKSSTFIAQDSGISVADLAVYARIHSYICGLSAKEGYKLNNVCRWFDFIQHQESVME 188
Query: 674 VVGSLTL 694
S+++
Sbjct: 189 AANSMSM 195
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 26.6 bits (56), Expect = 4.2
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +1
Query: 28 ANISSAPLLFPKTPTMAAGVLYTYPENFRAYKALIAAQYSG-TDVKVAPNFV-FGE 189
A ++ + L+ + A G +YT E+FRA K+L S T V+ FV FGE
Sbjct: 313 AYLTQSSQLYLEAALPALGSVYTIQESFRAEKSLTRRHLSEFTHVEFELPFVNFGE 368
>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 269 STFPSALSNAGTFPAGNFFKKSSDL 195
+TFP A + GTFP G F S L
Sbjct: 52 ATFPWAQAPVGTFPIGQLFDPVSGL 76
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 280 SNAIAYYVANESLRGGDLATQARVWQWAS 366
S + A Y+ NE+LR G + +R+W AS
Sbjct: 780 STSSAVYIKNENLRKGFVLGISRIWVSAS 808
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.8 bits (54), Expect = 7.3
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +1
Query: 376 SELLPAS-CAWVFPYLGIMQFNK--QNVERAMSDLLAALKVLDGHLLTRTFLVT 528
S+ +P + C W Y GI+ N + E MS K++DG L R +L+T
Sbjct: 1161 SKKVPCTFCCWY--YAGIIFLNTLFHHYEYVMSIAQEVRKLVDGKLYERYYLIT 1212
>SPCC320.10 |srp72||signal recognition particle subunit
Srp72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 412 PYLGIMQFNKQNVERAMSDLLAALK 486
PY+ + N+E+A+S LLA+ K
Sbjct: 236 PYISFRDLHGTNLEKALSSLLASQK 260
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,409,859
Number of Sequences: 5004
Number of extensions: 73599
Number of successful extensions: 246
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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