Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A02
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   237   1e-63
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   237   2e-63
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   6.0  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    26   7.9  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  237 bits (580), Expect = 1e-63
 Identities = 113/207 (54%), Positives = 134/207 (64%)
 Frame = +2

Query: 179 FVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTH 358
           FVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTH
Sbjct: 26  FVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTH 85

Query: 359 RSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIE 538
           RSGQ AFGNMCR GRMFAPTK WR+WH                          ARGH IE
Sbjct: 86  RSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIE 145

Query: 539 KIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQXXXXXXXXXXXXXXXXXX 718
           +IPE+PLVV D VQ   KTK+AV  L+ +KA+ D++KV  S+                  
Sbjct: 146 EIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRR 205

Query: 719 XPLIIXXXDQGLTRAFRNIPGVXXLNV 799
            PL++   D G+ +AFRNIPGV  +NV
Sbjct: 206 GPLVVFNEDTGIVKAFRNIPGVEIVNV 232


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  237 bits (579), Expect = 2e-63
 Identities = 113/207 (54%), Positives = 134/207 (64%)
 Frame = +2

Query: 179 FVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTH 358
           FVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTH
Sbjct: 26  FVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTH 85

Query: 359 RSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIE 538
           RSGQ AFGNMCR GRMFAPTK WR+WH                          ARGH IE
Sbjct: 86  RSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIE 145

Query: 539 KIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQXXXXXXXXXXXXXXXXXX 718
           +IPE+PLVV D VQ   KTK+AV  L+ +KA+ D++KV  S+                  
Sbjct: 146 EIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRR 205

Query: 719 XPLIIXXXDQGLTRAFRNIPGVXXLNV 799
            PL++   D G+ +AFRNIPGV  +NV
Sbjct: 206 GPLVVFNEDAGIVKAFRNIPGVEIVNV 232


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 161 APCTVSLFSEYTDTKGRATDRLISLL 84
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +3

Query: 6   VFHTSVAWRMVFITAISVYFGGIA-SLK*RNESIGSPTFSVGVF 134
           V    V W +VF+    ++ GG+A  LK   +S+    F V  F
Sbjct: 338 VIRARVGWGLVFVLICVIWGGGLAFQLKYTRKSVAESDFVVTDF 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,110,491
Number of Sequences: 5004
Number of extensions: 60158
Number of successful extensions: 171
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)