Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_A02
(857 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 231 5e-61
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 34 0.17
SB_31207| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 29 3.7
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_43395| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 29 4.8
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0) 29 4.8
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05) 28 8.5
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15) 28 8.5
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 231 bits (565), Expect = 5e-61
Identities = 113/206 (54%), Positives = 132/206 (64%)
Frame = +2
Query: 182 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 361
VFKAPIRPDLVN VH +++KN RQPY V+K AGHQTSAESWGTGRAVARIPRVRGGGTHR
Sbjct: 24 VFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQTSAESWGTGRAVARIPRVRGGGTHR 83
Query: 362 SGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEK 541
SGQGAFGNMCRGGRMFAPTK WR+WH ARGH IEK
Sbjct: 84 SGQGAFGNMCRGGRMFAPTKTWRKWHTKVNVQQRRFAVCSALAASALPALIMARGHRIEK 143
Query: 542 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQXXXXXXXXXXXXXXXXXXX 721
I E+PLV++D ++ + KT AV L+ + A+ D+ K S+
Sbjct: 144 IAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEKCIDSKKIRAGKGKMRNRRTVMRKG 203
Query: 722 PLIIXXXDQGLTRAFRNIPGVXXLNV 799
PLII DQGL +AFRN+PGV +V
Sbjct: 204 PLIIYNNDQGLRQAFRNLPGVELQHV 229
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 33.9 bits (74), Expect = 0.17
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 398 HHDTCYRRHPDRTYGYHHHGHAEFGQQHVRYPMIRHWF 285
HH CY H Y Y+ H H + + H YP RH++
Sbjct: 20 HHYCCYCHH---RYCYYRHHHYCWYRHHYHYPCYRHYY 54
>SB_31207| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -2
Query: 706 TTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYNQ 557
+T + HF KT R +H+K P E GL+D+LD G+ Q
Sbjct: 18 STVLHHFIDKHAKTPRFLHMKP-----NGPGEGGGSSGLLDMLDAAGFEQ 62
>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 30.3 bits (65), Expect = 2.1
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -1
Query: 383 YRRHPDRTYGYHHHGHAEFGQQHVRYPMIRHWFGDQ 276
Y +HP T+ YHH H + ++ ++P + H + Q
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVTHRYHQQ 447
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -1
Query: 383 YRRHPDRTYGYHHHGHAEFGQQHVRYPMIRHWFGDQPP 270
Y +HP T+ YH H + H ++P + H + Q P
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQVTHRYQYQHP 268
>SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 357 WVPPPRTRGIRATARPVPHD 298
W+PP RTR R T PV H+
Sbjct: 228 WMPPVRTRPARPTVMPVTHE 247
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 398 HHDTCYRRHPDRTYGYHHHGHAEFGQQHVRY 306
HH RH R + +HHH H E+ ++H RY
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH-RY 353
>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 407 TYVHHDTCYRRHPDRTYGYHHHGHA 333
TY H DT R+HPD H HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147
>SB_43395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 29.1 bits (62), Expect = 4.8
Identities = 34/101 (33%), Positives = 40/101 (39%), Gaps = 10/101 (9%)
Frame = -1
Query: 344 HGHAEFGQQ----HVRYPMIRHWF----GDQPPCXXXXXXXXSWT*KREHH*PGPDVWAP 189
HG AE Q R + WF G PP W +R H G DV P
Sbjct: 809 HGDAEVADQATEDQFRMDRLAGWFFRTPGTPPPPRLATCQVRLW--RRSHF--GKDVKRP 864
Query: 188 *IRXGRGLAAPCTVS--LFSEYTDTKGRATDRLISLL*RSY 72
GRGLA L +YTD KGR +LI+ L S+
Sbjct: 865 -SDTGRGLAQMRENQNILPRKYTDAKGRIRQKLINGLYDSF 904
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 287 TSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 403
T +E +G ++ R PR RGGG G G G RGGR
Sbjct: 983 TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022
>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2325
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 206 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARI 331
D+ NDV ++++ + PY + H T E TG+ +A++
Sbjct: 2034 DVTNDVTINVTDVNEAPYDIRLVPSHVTVKEDIRTGQCIAQV 2075
>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
Length = 1098
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +2
Query: 305 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 433
G GR + R P GGG R G +G M GG P W R
Sbjct: 271 GQGRGMGRGP---GGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 176 GRGLAAPCTVSLFSEYTDTKGRATDRLI 93
G+GL C+V+L S Y T+G+ RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190
>SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)
Length = 715
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 200 RPDLVNDVHVSMSKNSRQPYC-VSKEAGHQTSAESWGTGRAV 322
RP +SM K R+PY + +E GH+ S T R V
Sbjct: 156 RPGCDTHEKISMEKRKREPYLELIRETGHERQRRSVSTERNV 197
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,011,021
Number of Sequences: 59808
Number of extensions: 532335
Number of successful extensions: 1632
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1585
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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