Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_A02
(857 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 207 6e-54
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 207 6e-54
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 31 0.98
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 30 1.7
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 30 1.7
At2g47550.1 68415.m05934 pectinesterase family protein contains ... 29 3.0
At1g53120.1 68414.m06015 RNA-binding S4 domain-containing protein 29 5.2
At1g18670.1 68414.m02330 protein kinase family protein contains ... 29 5.2
At1g26400.1 68414.m03220 FAD-binding domain-containing protein s... 28 6.9
At4g12470.1 68417.m01972 protease inhibitor/seed storage/lipid t... 28 9.1
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 207 bits (506), Expect = 6e-54
Identities = 101/207 (48%), Positives = 124/207 (59%), Gaps = 1/207 (0%)
Frame = +2
Query: 182 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 361
V AP+RPD+VN VH +S NSRQPY VSK+AGHQTSAESWGTGRAV+RIPRV GGGTHR
Sbjct: 33 VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHR 92
Query: 362 SGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEK 541
+GQ AFGNMCRGGRMFAPTK WRRWH ARGH IE
Sbjct: 93 AGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIEN 152
Query: 542 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQXXXXXXXXXXXXXXXXXXX 721
+PE+PLVV+D + + KT A+ L+++ A+ D K S
Sbjct: 153 VPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKG 212
Query: 722 PLIIXXXDQG-LTRAFRNIPGVXXLNV 799
PL++ + + +AFRN+PGV +V
Sbjct: 213 PLVVFGTEGAKIVKAFRNLPGVELCHV 239
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 207 bits (506), Expect = 6e-54
Identities = 101/207 (48%), Positives = 124/207 (59%), Gaps = 1/207 (0%)
Frame = +2
Query: 182 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 361
V AP+RPD+VN VH +S NSRQPY VSK+AGHQTSAESWGTGRAV+RIPRV GGGTHR
Sbjct: 32 VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHR 91
Query: 362 SGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEK 541
+GQ AFGNMCRGGRMFAPTK WRRWH ARGH IE
Sbjct: 92 AGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIEN 151
Query: 542 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQXXXXXXXXXXXXXXXXXXX 721
+PE+PLVV+D + + KT A+ L+++ A+ D K S
Sbjct: 152 VPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKG 211
Query: 722 PLIIXXXD-QGLTRAFRNIPGVXXLNV 799
PL++ + + +AFRN+PGV +V
Sbjct: 212 PLVVYGTEGSKIVKAFRNLPGVELCHV 238
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 31.1 bits (67), Expect = 0.98
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 398 HHDTCYRRHPDRTYGYHHHGHAEF 327
HH Y H YGY +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +1
Query: 394 WWTYVRPHEALAALAPSRQPPTAESGLGSSRCCYWRPSARSG*RTHY*KDSRASLGCSRQ 573
WW +V LA+ APS P + L SR C P ++S + H D+ R
Sbjct: 465 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLCP-SPLSQSSKQHHIRLDNHFDTSTPRS 523
Query: 574 S 576
S
Sbjct: 524 S 524
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +1
Query: 394 WWTYVRPHEALAALAPSRQPPTAESGLGSSRCCYWRPSARSG*RTHY*KDSRASLGCSRQ 573
WW +V LA+ APS P + L SR C P ++S + H D+ R
Sbjct: 464 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLCP-SPLSQSSKQHHIRLDNHFDTSTPRS 522
Query: 574 S 576
S
Sbjct: 523 S 523
>At2g47550.1 68415.m05934 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 560
Score = 29.5 bits (63), Expect = 3.0
Identities = 23/93 (24%), Positives = 39/93 (41%)
Frame = -2
Query: 808 SAXNIQXXHPGDVXEXASQTLIXXXNYEGSLTLDTTTVAHFTLTSTKTLRLVHLKDIRPC 629
S + + G V ++ + + SLT+D + T STKTL L +D+
Sbjct: 79 SMIDAELDRKGKVAAKSTVGALEDCKFLASLTMDYLLSSSQTADSTKTLSLSRAEDVHTF 138
Query: 628 LEAPQEDDSLFGLVDLLDFVGYNQGKLGNLFNN 530
L A ++ ++ L G G+LFN+
Sbjct: 139 LSAAITNEQT--CLEGLKSTASENGLSGDLFND 169
>At1g53120.1 68414.m06015 RNA-binding S4 domain-containing protein
Length = 320
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/63 (23%), Positives = 31/63 (49%)
Frame = -2
Query: 727 EGSLTLDTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYNQGKL 548
E SL +D A F ++ +K + L+ KD+R ++ ++ D++ G + K+
Sbjct: 242 EASLRIDAVASAGFKISRSKLVDLISSKDVRVNWATVTKNGTIVKTGDVVSVSGKGRLKI 301
Query: 547 GNL 539
G +
Sbjct: 302 GEI 304
>At1g18670.1 68414.m02330 protein kinase family protein contains
Protein kinases ATP-binding region signature,
PROSITE:PS00107 and Serine/Threonine protein kinases
active-site signature, PROSITE:PS00108
Length = 662
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +1
Query: 511 RSG*RTHY*KDSRASLGCSRQSPGDQQDQTGCHLPEAPQGMV*YP*GVQVSASS 672
R+G H DS ++L Q P + + H+ A QG V + +QVS SS
Sbjct: 491 RNGHSVHNSIDSDSTLFEKMQKPSNHEKDEASHVKNASQGDVPFSGPLQVSVSS 544
>At1g26400.1 68414.m03220 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 527
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -3
Query: 600 CLVLLISWTLSATTKGSSGIFS 535
CLVLL+S +A TK SGIF+
Sbjct: 9 CLVLLVSILRAAVTKPDSGIFT 30
>At4g12470.1 68417.m01972 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to pEARLI
1 (Accession No. L43080): an Arabidopsis member of a
conserved gene family (PGF95-099), Plant Physiol. 109
(4), 1497 (1995); contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 161
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = -2
Query: 553 KLGNLFNNVSSSLNERWDASSSNGCCQGRSPLSEVDATVPAPPGLR 416
KLG N +SS LN + SS CC L +VDA + LR
Sbjct: 84 KLGVCANVLSSLLNIQLGQPSSQQCCSLIQGLVDVDAAICLCTALR 129
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,230,671
Number of Sequences: 28952
Number of extensions: 362030
Number of successful extensions: 1196
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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