Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_A01
(835 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D79995-1|BAA11490.2| 1203|Homo sapiens KIAA0173 protein. 33 0.96
BC021707-1|AAH21707.1| 1199|Homo sapiens tubulin tyrosine ligase... 33 0.96
AK093255-1|BAC04111.1| 623|Homo sapiens protein ( Homo sapiens ... 32 2.9
AY684169-1|AAT74627.1| 3052|Homo sapiens REV3-like, catalytic su... 31 6.8
AL512325-1|CAI20998.1| 3130|Homo sapiens REV3-like, catalytic su... 31 6.8
AL136310-2|CAI20509.1| 3130|Homo sapiens REV3-like, catalytic su... 31 6.8
AL080317-2|CAI19192.1| 3130|Homo sapiens REV3-like, catalytic su... 31 6.8
AF179429-1|AAG09403.1| 3052|Homo sapiens DNA polymerase zeta cat... 31 6.8
AF179428-1|AAG09402.1| 3052|Homo sapiens DNA polymerase zeta cat... 31 6.8
AF157476-1|AAD40184.1| 3130|Homo sapiens DNA polymerase zeta cat... 31 6.8
AF078695-1|AAC28460.1| 3052|Homo sapiens DNA polymerase zeta cat... 31 6.8
AF071798-1|AAC24009.1| 3130|Homo sapiens DNA polymerase zeta cat... 31 6.8
AF058701-1|AAC24357.1| 3130|Homo sapiens DNA polymerase zeta cat... 31 6.8
AF035537-1|AAB88486.1| 3052|Homo sapiens DNA polymerase zeta pro... 31 6.8
>D79995-1|BAA11490.2| 1203|Homo sapiens KIAA0173 protein.
Length = 1203
Score = 33.5 bits (73), Expect = 0.96
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +3
Query: 252 TMSASQKESWAAAIDLLTNDECRLLLEVEDFFNDDCDLLKNFPS 383
T ++ +A+ +D+LT D+ R+L+E+ED F+ + FPS
Sbjct: 990 TQKIPDQDFYASVLDVLTPDDVRILVEMEDEFSRRGQFERIFPS 1033
>BC021707-1|AAH21707.1| 1199|Homo sapiens tubulin tyrosine ligase-like
family, member 4 protein.
Length = 1199
Score = 33.5 bits (73), Expect = 0.96
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +3
Query: 252 TMSASQKESWAAAIDLLTNDECRLLLEVEDFFNDDCDLLKNFPS 383
T ++ +A+ +D+LT D+ R+L+E+ED F+ + FPS
Sbjct: 986 TQKIPDQDFYASVLDVLTPDDVRILVEMEDEFSRRGQFERIFPS 1029
>AK093255-1|BAC04111.1| 623|Homo sapiens protein ( Homo sapiens
cDNA FLJ35936 fis, clone TESTI2011448, weakly similar to
Human l(3)mbt protein homolog mRNA. ).
Length = 623
Score = 31.9 bits (69), Expect = 2.9
Identities = 22/66 (33%), Positives = 34/66 (51%)
Frame = -3
Query: 413 GVIDFDLRCSARKVFKQITIIIEEILNFEQQTALIVSEQIDGRSP*LLLTRTHCCNDLVP 234
GV D AR ++ ++ +L E+ EQIDG++ LLLT+T D+V
Sbjct: 531 GVADIRASQVARWTVDEVAEFVQSLLGCEEHAKCFKKEQIDGKA-FLLLTQT----DIVK 585
Query: 233 RMRIKV 216
M+IK+
Sbjct: 586 VMKIKL 591
>AY684169-1|AAT74627.1| 3052|Homo sapiens REV3-like, catalytic
subunit of DNA polymerase zeta (yeast) protein.
Length = 3052
Score = 30.7 bits (66), Expect = 6.8
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +2
Query: 104 PACAFTHNIKMLAKMAPSQDKLVHLHKTPTSLDINPSGLLFAFVELNHYNNECESEG 274
P+ +T NI+ + K +P +H+H+ P + + F F +LNH N+ SEG
Sbjct: 596 PSRKYT-NIRKIEKDSP----FIHMHRHPNENTLGKNS--FNFSDLNHSKNKVSSEG 645
>AL512325-1|CAI20998.1| 3130|Homo sapiens REV3-like, catalytic
subunit of DNA polymerase zeta (yeast) protein.
Length = 3130
Score = 30.7 bits (66), Expect = 6.8
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +2
Query: 104 PACAFTHNIKMLAKMAPSQDKLVHLHKTPTSLDINPSGLLFAFVELNHYNNECESEG 274
P+ +T NI+ + K +P +H+H+ P + + F F +LNH N+ SEG
Sbjct: 674 PSRKYT-NIRKIEKDSP----FIHMHRHPNENTLGKNS--FNFSDLNHSKNKVSSEG 723
>AL136310-2|CAI20509.1| 3130|Homo sapiens REV3-like, catalytic
subunit of DNA polymerase zeta (yeast) protein.
Length = 3130
Score = 30.7 bits (66), Expect = 6.8
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +2
Query: 104 PACAFTHNIKMLAKMAPSQDKLVHLHKTPTSLDINPSGLLFAFVELNHYNNECESEG 274
P+ +T NI+ + K +P +H+H+ P + + F F +LNH N+ SEG
Sbjct: 674 PSRKYT-NIRKIEKDSP----FIHMHRHPNENTLGKNS--FNFSDLNHSKNKVSSEG 723
>AL080317-2|CAI19192.1| 3130|Homo sapiens REV3-like, catalytic
subunit of DNA polymerase zeta (yeast) protein.
Length = 3130
Score = 30.7 bits (66), Expect = 6.8
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +2
Query: 104 PACAFTHNIKMLAKMAPSQDKLVHLHKTPTSLDINPSGLLFAFVELNHYNNECESEG 274
P+ +T NI+ + K +P +H+H+ P + + F F +LNH N+ SEG
Sbjct: 674 PSRKYT-NIRKIEKDSP----FIHMHRHPNENTLGKNS--FNFSDLNHSKNKVSSEG 723
>AF179429-1|AAG09403.1| 3052|Homo sapiens DNA polymerase zeta
catalytic subunit variant 2 protein.
Length = 3052
Score = 30.7 bits (66), Expect = 6.8
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +2
Query: 104 PACAFTHNIKMLAKMAPSQDKLVHLHKTPTSLDINPSGLLFAFVELNHYNNECESEG 274
P+ +T NI+ + K +P +H+H+ P + + F F +LNH N+ SEG
Sbjct: 596 PSRKYT-NIRKIEKDSP----FIHMHRHPNENTLGKNS--FNFSDLNHSKNKVSSEG 645
>AF179428-1|AAG09402.1| 3052|Homo sapiens DNA polymerase zeta
catalytic subunit variant 1 protein.
Length = 3052
Score = 30.7 bits (66), Expect = 6.8
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +2
Query: 104 PACAFTHNIKMLAKMAPSQDKLVHLHKTPTSLDINPSGLLFAFVELNHYNNECESEG 274
P+ +T NI+ + K +P +H+H+ P + + F F +LNH N+ SEG
Sbjct: 596 PSRKYT-NIRKIEKDSP----FIHMHRHPNENTLGKNS--FNFSDLNHSKNKVSSEG 645
>AF157476-1|AAD40184.1| 3130|Homo sapiens DNA polymerase zeta
catalytic subunit protein.
Length = 3130
Score = 30.7 bits (66), Expect = 6.8
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +2
Query: 104 PACAFTHNIKMLAKMAPSQDKLVHLHKTPTSLDINPSGLLFAFVELNHYNNECESEG 274
P+ +T NI+ + K +P +H+H+ P + + F F +LNH N+ SEG
Sbjct: 674 PSRKYT-NIRKIEKDSP----FIHMHRHPNENTLGKNS--FNFSDLNHSKNKVSSEG 723
>AF078695-1|AAC28460.1| 3052|Homo sapiens DNA polymerase zeta
catalytic subunit protein.
Length = 3052
Score = 30.7 bits (66), Expect = 6.8
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +2
Query: 104 PACAFTHNIKMLAKMAPSQDKLVHLHKTPTSLDINPSGLLFAFVELNHYNNECESEG 274
P+ +T NI+ + K +P +H+H+ P + + F F +LNH N+ SEG
Sbjct: 596 PSRKYT-NIRKIEKDSP----FIHMHRHPNENTLGKNS--FNFSDLNHSKNKVSSEG 645
>AF071798-1|AAC24009.1| 3130|Homo sapiens DNA polymerase zeta
catalytic subunit protein.
Length = 3130
Score = 30.7 bits (66), Expect = 6.8
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +2
Query: 104 PACAFTHNIKMLAKMAPSQDKLVHLHKTPTSLDINPSGLLFAFVELNHYNNECESEG 274
P+ +T NI+ + K +P +H+H+ P + + F F +LNH N+ SEG
Sbjct: 674 PSRKYT-NIRKIEKDSP----FIHMHRHPNENTLGKNS--FNFSDLNHSKNKVSSEG 723
>AF058701-1|AAC24357.1| 3130|Homo sapiens DNA polymerase zeta
catalytic subunit protein.
Length = 3130
Score = 30.7 bits (66), Expect = 6.8
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +2
Query: 104 PACAFTHNIKMLAKMAPSQDKLVHLHKTPTSLDINPSGLLFAFVELNHYNNECESEG 274
P+ +T NI+ + K +P +H+H+ P + + F F +LNH N+ SEG
Sbjct: 674 PSRKYT-NIRKIEKDSP----FIHMHRHPNENTLGKNS--FNFSDLNHSKNKVSSEG 723
>AF035537-1|AAB88486.1| 3052|Homo sapiens DNA polymerase zeta
protein.
Length = 3052
Score = 30.7 bits (66), Expect = 6.8
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +2
Query: 104 PACAFTHNIKMLAKMAPSQDKLVHLHKTPTSLDINPSGLLFAFVELNHYNNECESEG 274
P+ +T NI+ + K +P +H+H+ P + + F F +LNH N+ SEG
Sbjct: 596 PSRKYT-NIRKIEKDSP----FIHMHRHPNENTLGKNS--FNFSDLNHSKNKVSSEG 645
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,014,921
Number of Sequences: 237096
Number of extensions: 2035036
Number of successful extensions: 4019
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4018
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10482413384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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