Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP18_FL5_C06
(835 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X85133-1|CAA59445.1| 948|Homo sapiens RB protein binding protei... 33 1.7
BC063524-1|AAH63524.1| 919|Homo sapiens RBBP6 protein protein. 33 1.7
AY072922-1|AAL68925.1| 1625|Homo sapiens p53-associated cellular... 33 1.7
AF352051-1|AAL05625.1| 1616|Homo sapiens proliferation potential... 33 1.7
AB112075-1|BAC77637.1| 1758|Homo sapiens retinoblastoma binding ... 33 1.7
AB112074-1|BAC77636.1| 1792|Homo sapiens retinoblastoma binding ... 33 1.7
X89894-1|CAA61984.1| 443|Homo sapiens nuclear receptor protein. 31 3.9
S81243-1|AAB36006.1| 684|Homo sapiens CHN protein. 31 3.9
D78579-1|BAA11419.1| 626|Homo sapiens neuron derived orphan rec... 31 3.9
AL359710-3|CAI95139.1| 443|Homo sapiens nuclear receptor subfam... 31 3.9
AL359710-2|CAI95138.1| 626|Homo sapiens nuclear receptor subfam... 31 3.9
AL359710-1|CAM16648.1| 637|Homo sapiens nuclear receptor subfam... 31 3.9
AL358937-4|CAI95320.1| 626|Homo sapiens nuclear receptor subfam... 31 3.9
AL358937-3|CAM22558.1| 637|Homo sapiens nuclear receptor subfam... 31 3.9
>X85133-1|CAA59445.1| 948|Homo sapiens RB protein binding protein
protein.
Length = 948
Score = 32.7 bits (71), Expect = 1.7
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Frame = +1
Query: 526 IKPPSPAISXYINPIIKSPNSIHQPP-------XT*HPFPSIR*XRTKXSSXRGLKPPLS 684
I PP P I + P+++SP S Q P + HP PSI + SS L PP+S
Sbjct: 167 IPPPRPLIQRNLQPLMRSPISRQQDPLMIPVTSSSTHPAPSISSLTSNQSS---LAPPVS 223
Query: 685 SXAPSA 702
SA
Sbjct: 224 GNPSSA 229
>BC063524-1|AAH63524.1| 919|Homo sapiens RBBP6 protein protein.
Length = 919
Score = 32.7 bits (71), Expect = 1.7
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Frame = +1
Query: 526 IKPPSPAISXYINPIIKSPNSIHQPP-------XT*HPFPSIR*XRTKXSSXRGLKPPLS 684
I PP P I + P+++SP S Q P + HP PSI + SS L PP+S
Sbjct: 343 IPPPRPLIQRNLQPLMRSPISRQQDPLMIPVTSSSTHPAPSISSLTSNQSS---LAPPVS 399
Query: 685 SXAPSA 702
SA
Sbjct: 400 GNPSSA 405
>AY072922-1|AAL68925.1| 1625|Homo sapiens p53-associated cellular
protein PACT protein.
Length = 1625
Score = 32.7 bits (71), Expect = 1.7
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Frame = +1
Query: 526 IKPPSPAISXYINPIIKSPNSIHQPP-------XT*HPFPSIR*XRTKXSSXRGLKPPLS 684
I PP P I + P+++SP S Q P + HP PSI + SS L PP+S
Sbjct: 210 IPPPRPLIQRNLQPLMRSPISRQQDPLMIPVTSSSTHPAPSISSLTSNQSS---LAPPVS 266
Query: 685 SXAPSA 702
SA
Sbjct: 267 GNPSSA 272
>AF352051-1|AAL05625.1| 1616|Homo sapiens proliferation
potential-related protein protein.
Length = 1616
Score = 32.7 bits (71), Expect = 1.7
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Frame = +1
Query: 526 IKPPSPAISXYINPIIKSPNSIHQPP-------XT*HPFPSIR*XRTKXSSXRGLKPPLS 684
I PP P I + P+++SP S Q P + HP PSI + SS L PP+S
Sbjct: 167 IPPPRPLIQRNLQPLMRSPISRQQDPLMIPVTSSSTHPAPSISSLTSNQSS---LAPPVS 223
Query: 685 SXAPSA 702
SA
Sbjct: 224 GNPSSA 229
>AB112075-1|BAC77637.1| 1758|Homo sapiens retinoblastoma binding
protein 6 isoform 2 protein.
Length = 1758
Score = 32.7 bits (71), Expect = 1.7
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Frame = +1
Query: 526 IKPPSPAISXYINPIIKSPNSIHQPP-------XT*HPFPSIR*XRTKXSSXRGLKPPLS 684
I PP P I + P+++SP S Q P + HP PSI + SS L PP+S
Sbjct: 343 IPPPRPLIQRNLQPLMRSPISRQQDPLMIPVTSSSTHPAPSISSLTSNQSS---LAPPVS 399
Query: 685 SXAPSA 702
SA
Sbjct: 400 GNPSSA 405
>AB112074-1|BAC77636.1| 1792|Homo sapiens retinoblastoma binding
protein 6 isoform 1 protein.
Length = 1792
Score = 32.7 bits (71), Expect = 1.7
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Frame = +1
Query: 526 IKPPSPAISXYINPIIKSPNSIHQPP-------XT*HPFPSIR*XRTKXSSXRGLKPPLS 684
I PP P I + P+++SP S Q P + HP PSI + SS L PP+S
Sbjct: 343 IPPPRPLIQRNLQPLMRSPISRQQDPLMIPVTSSSTHPAPSISSLTSNQSS---LAPPVS 399
Query: 685 SXAPSA 702
SA
Sbjct: 400 GNPSSA 405
>X89894-1|CAA61984.1| 443|Homo sapiens nuclear receptor protein.
Length = 443
Score = 31.5 bits (68), Expect = 3.9
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 252 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 413
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>S81243-1|AAB36006.1| 684|Homo sapiens CHN protein.
Length = 684
Score = 31.5 bits (68), Expect = 3.9
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 252 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 413
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 93 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 144
>D78579-1|BAA11419.1| 626|Homo sapiens neuron derived orphan
receptor protein.
Length = 626
Score = 31.5 bits (68), Expect = 3.9
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 252 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 413
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-3|CAI95139.1| 443|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 443
Score = 31.5 bits (68), Expect = 3.9
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 252 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 413
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-2|CAI95138.1| 626|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 626
Score = 31.5 bits (68), Expect = 3.9
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 252 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 413
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-1|CAM16648.1| 637|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 637
Score = 31.5 bits (68), Expect = 3.9
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 252 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 413
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 46 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 97
>AL358937-4|CAI95320.1| 626|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 626
Score = 31.5 bits (68), Expect = 3.9
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 252 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 413
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL358937-3|CAM22558.1| 637|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 637
Score = 31.5 bits (68), Expect = 3.9
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 252 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 413
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 46 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 97
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,256,660
Number of Sequences: 237096
Number of extensions: 2307170
Number of successful extensions: 9059
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9059
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10482413384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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