Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP18_FL5_C05
(849 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 66 8e-11
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 66 8e-11
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 56 5e-08
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 54 3e-07
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 52 1e-06
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 52 1e-06
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 52 1e-06
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 52 1e-06
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 52 1e-06
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 52 1e-06
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 52 1e-06
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 48 1e-05
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 48 1e-05
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 48 2e-05
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 48 2e-05
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 47 3e-05
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 47 3e-05
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 47 3e-05
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 47 3e-05
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 47 3e-05
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 47 4e-05
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 46 7e-05
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 46 7e-05
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 44 3e-04
X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein ( Dros... 38 0.017
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 33 0.65
BT004884-1|AAO45240.1| 368|Drosophila melanogaster GH09623p pro... 32 1.1
AE014297-4026|AAF56642.2| 368|Drosophila melanogaster CG6330-PA... 32 1.1
AE014297-4025|AAN14095.1| 347|Drosophila melanogaster CG6330-PB... 31 1.5
AY071740-1|AAL49362.1| 184|Drosophila melanogaster RH47344p pro... 31 2.0
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 65.7 bits (153), Expect = 8e-11
Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 3/192 (1%)
Frame = +1
Query: 127 LWHRALLSKIPSYGIPEGLCKWIASFLDGRSITVVVXGDCSDTMTINAGVPQGSVLSPTL 306
+WH LL K+ G P L K + +FL R +V + S +NAGVPQGSVL PTL
Sbjct: 617 VWHDGLLHKLKMIGTPIYLIKIVQNFLTHRYFSVNLNSSQSARRILNAGVPQGSVLGPTL 676
Query: 307 FILYINDMLSIDXMHCYADDXTGDARYIGHQSLSRSAVQERRSKLVSEVXNSLGRVSKWG 486
F ++ +D+ +C DA + S S + + ++E+ KW
Sbjct: 677 FNIFTHDI--PQATNCVLSLFADDAA-VYSAGFSYSEINQSMQSYLNELDI---YYKKW- 729
Query: 487 ELNLVQFNPLKTQVCAFTAKKDP-FVMAPQFQXVS--LQPSXSIGILGVDISSDVQFXSH 657
++ NP KT FT ++ P ++ Q + + +Q +I LG+ + F H
Sbjct: 730 ---KIKINPNKTNAIFFTKRRKPRYLPDRQLRILDSPIQWVDNIRYLGIIFDKKLTFKYH 786
Query: 658 LEGKXXLASKML 693
+ +K++
Sbjct: 787 INNTIMKVNKII 798
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 65.7 bits (153), Expect = 8e-11
Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 3/192 (1%)
Frame = +1
Query: 127 LWHRALLSKIPSYGIPEGLCKWIASFLDGRSITVVVXGDCSDTMTINAGVPQGSVLSPTL 306
+WH LL K+ G P L K + +FL R +V + S +NAGVPQGSVL PTL
Sbjct: 565 VWHDGLLHKLKMIGTPIYLIKIVQNFLTHRYFSVNLNSSQSARRILNAGVPQGSVLGPTL 624
Query: 307 FILYINDMLSIDXMHCYADDXTGDARYIGHQSLSRSAVQERRSKLVSEVXNSLGRVSKWG 486
F ++ +D+ +C DA + S S + + ++E+ KW
Sbjct: 625 FNIFTHDI--PQATNCVLSLFADDAA-VYSAGFSYSEINQSMQSYLNELDI---YYKKW- 677
Query: 487 ELNLVQFNPLKTQVCAFTAKKDP-FVMAPQFQXVS--LQPSXSIGILGVDISSDVQFXSH 657
++ NP KT FT ++ P ++ Q + + +Q +I LG+ + F H
Sbjct: 678 ---KIKINPNKTNAIFFTKRRKPRYLPDRQLRILDSPIQWVDNIRYLGIIFDKKLTFKYH 734
Query: 658 LEGKXXLASKML 693
+ +K++
Sbjct: 735 INNTIMKVNKII 746
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p protein.
Length = 906
Score = 56.4 bits (130), Expect = 5e-08
Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 1/180 (0%)
Frame = +1
Query: 127 LWHRALLSKIPSYGIPEGLCKWIASFLDGRSITVVVXGDCSDTMTINAGVPQGSVLSPTL 306
+WH L+SK+ P + S+L+ R V V S + AGVPQGSVL P L
Sbjct: 593 VWHDGLISKVKKL-FPAPYYGVLKSYLEDRRFMVRVRNSYSIPRVMRAGVPQGSVLGPLL 651
Query: 307 FILYINDMLSIDXMHCYADDXTGDARYIGHQSLSRSAVQERRSKLVSEVXNSLGRVSKWG 486
+ ++ D+ + H A Y +L S+ ++ + L ++ W
Sbjct: 652 YSVFTADLPCPNAYHMADPRKALLATYADDIALLYSS--NCCNEAARGLQEYLTTLAAWC 709
Query: 487 ELNLVQFNPLKTQVCAFTAKKDPFVMAP-QFQXVSLQPSXSIGILGVDISSDVQFXSHLE 663
+ +++ NP KT FT K V AP + + V L LG+ + + F HL+
Sbjct: 710 KRWILKVNPQKTINPCFTLKTLSPVTAPIELEGVILDQPSQAKYLGITLDKRLTFGPHLK 769
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding protein,
3' end. ).
Length = 858
Score = 53.6 bits (123), Expect = 3e-07
Identities = 50/183 (27%), Positives = 79/183 (43%), Gaps = 2/183 (1%)
Frame = +1
Query: 127 LWHRALLSKIPSYGIPEGLCKWIASFLDGRSITVVVXGDCSDTMTINAGVPQGSVLSPTL 306
+W L+ KI +PE K + S+L R V S TI AGVPQGSVL PTL
Sbjct: 590 VWLDGLMFKI-KISLPESTHKLLKSYLYDRKFAVRCNTATSTVHTIEAGVPQGSVLGPTL 648
Query: 307 FILYINDMLSIDXM--HCYADDXTGDARYIGHQSLSRSAVQERRSKLVSEVXNSLGRVSK 480
+++Y D+ + + +ADD +R SRS +Q +++ L + K
Sbjct: 649 YLIYTADIPTNSRLTVSTFADDTAILSR-------SRSPIQ-----ATAQLALYLIDIKK 696
Query: 481 WGELNLVQFNPLKTQVCAFTAKKDPFVMAPQFQXVSLQPSXSIGILGVDISSDVQFXSHL 660
W ++ N K + FT + + L + + LGV + + + H+
Sbjct: 697 WLSDWRIKVNEQKCKHVTFTLNRQD-CPPLLLNSIPLPKADEVTYLGVHLDRRLTWRRHI 755
Query: 661 EGK 669
E K
Sbjct: 756 EAK 758
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 52.0 bits (119), Expect = 1e-06
Identities = 30/68 (44%), Positives = 38/68 (55%)
Frame = +1
Query: 127 LWHRALLSKIPSYGIPEGLCKWIASFLDGRSITVVVXGDCSDTMTINAGVPQGSVLSPTL 306
+WH LL K P L + SFL+ R+ V V G S I AGVPQGSVL PTL
Sbjct: 594 VWHPGLLYKAKRL-FPPQLYLVVKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTL 652
Query: 307 FILYINDM 330
+ ++ +DM
Sbjct: 653 YSVFASDM 660
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 52.0 bits (119), Expect = 1e-06
Identities = 30/68 (44%), Positives = 38/68 (55%)
Frame = +1
Query: 127 LWHRALLSKIPSYGIPEGLCKWIASFLDGRSITVVVXGDCSDTMTINAGVPQGSVLSPTL 306
+WH LL K P L + SFL+ R+ V V G S I AGVPQGSVL PTL
Sbjct: 396 VWHPGLLYKAKRL-FPPQLYLVVKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTL 454
Query: 307 FILYINDM 330
+ ++ +DM
Sbjct: 455 YSVFASDM 462
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 52.0 bits (119), Expect = 1e-06
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = +1
Query: 127 LWHRALLSKIPSYGIPEGLCKWIASFLDGRSITVVVXGDCSDTM-TINAGVPQGSVLSPT 303
+WH LL K+ S IP L + ++L R+ +V + G+ + + I AGVPQGS+L P
Sbjct: 193 VWHDGLLYKL-SRLIPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPV 251
Query: 304 LFILYINDM 330
L+ +Y +DM
Sbjct: 252 LYSIYSSDM 260
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 52.0 bits (119), Expect = 1e-06
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = +1
Query: 127 LWHRALLSKIPSYGIPEGLCKWIASFLDGRSITVVVXGDCSDTM-TINAGVPQGSVLSPT 303
+WH LL K+ S IP L + ++L R+ +V + G+ + + I AGVPQGS+L P
Sbjct: 640 VWHDGLLYKL-SRLIPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPV 698
Query: 304 LFILYINDM 330
L+ +Y +DM
Sbjct: 699 LYSIYSSDM 707
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 52.0 bits (119), Expect = 1e-06
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = +1
Query: 127 LWHRALLSKIPSYGIPEGLCKWIASFLDGRSITVVVXGDCSDTM-TINAGVPQGSVLSPT 303
+WH LL K+ S IP L + ++L R+ +V + G+ + + I AGVPQGS+L P
Sbjct: 640 VWHDGLLYKL-SRLIPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPV 698
Query: 304 LFILYINDM 330
L+ +Y +DM
Sbjct: 699 LYSIYSSDM 707
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 52.0 bits (119), Expect = 1e-06
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = +1
Query: 127 LWHRALLSKIPSYGIPEGLCKWIASFLDGRSITVVVXGDCSDTM-TINAGVPQGSVLSPT 303
+WH LL K+ S IP L + ++L R+ +V + G+ + + I AGVPQGS+L P
Sbjct: 640 VWHDGLLYKL-SRLIPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPV 698
Query: 304 LFILYINDM 330
L+ +Y +DM
Sbjct: 699 LYSIYSSDM 707
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 51.6 bits (118), Expect = 1e-06
Identities = 28/68 (41%), Positives = 37/68 (54%)
Frame = +1
Query: 127 LWHRALLSKIPSYGIPEGLCKWIASFLDGRSITVVVXGDCSDTMTINAGVPQGSVLSPTL 306
+W L+ KI +P+ + K + S+LD R V S TI AGVPQGSVL P L
Sbjct: 129 VWLDGLMFKIIQL-LPQNIHKLLKSYLDKRVFAVRCSSSTSSDFTIEAGVPQGSVLGPIL 187
Query: 307 FILYINDM 330
+ LY D+
Sbjct: 188 YTLYTADI 195
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 48.4 bits (110), Expect = 1e-05
Identities = 53/187 (28%), Positives = 76/187 (40%), Gaps = 6/187 (3%)
Frame = +1
Query: 127 LWHRALLSKIPSYGIPEGLCKWIASFLDGRSITVVVXGDCSDTMTINAGVPQGSVLSPTL 306
+W LL KI +P+ K + S+L R + S I AGVPQGSVL P L
Sbjct: 588 VWLDGLLFKIIKL-LPQNTHKLLKSYLYNRVFAIRCDTSTSRDCAIEAGVPQGSVLGPIL 646
Query: 307 FILYINDMLSID---XMHCYADDXTGDARYIGHQSLSRSAVQERRSKLVSEVXNSLGRVS 477
+ LY D ID +ADD LSRS + + L+S L V
Sbjct: 647 YTLYTAD-FPIDYNLTTSTFADDTA---------ILSRSKCPIKATALLS---RHLTSVE 693
Query: 478 KWGELNLVQFNPLKTQVCAFTAKKD---PFVMAPQFQXVSLQPSXSIGILGVDISSDVQF 648
+W + N K + FT K P V+ + + + + LGV + + +
Sbjct: 694 RWLADWRISINVQKCKQVTFTLNKQTCPPLVL----NNICIPQADEVTYLGVHLDRRLTW 749
Query: 649 XSHLEGK 669
H+E K
Sbjct: 750 RKHIEAK 756
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 48.4 bits (110), Expect = 1e-05
Identities = 45/185 (24%), Positives = 86/185 (46%), Gaps = 5/185 (2%)
Frame = +1
Query: 118 STGLWHRALLSKIPSYGIPEGLCKWIASFLDGRSITVVVXGDCSDTMTINAGVPQGSVLS 297
+T W +L + + G+P+ + I ++ R + V D + ++AGVPQGSVL
Sbjct: 563 NTARWP-IILGAMRNLGVPDYIRGVIGNYFRDRVLWYVTE-DGPRSHQVSAGVPQGSVLG 620
Query: 298 PTLFILYINDMLSID-----XMHCYADDXTGDARYIGHQSLSRSAVQERRSKLVSEVXNS 462
P L+ + + +LSI +HC+ADD ++ +AV + +L +
Sbjct: 621 PILWNIMYDGILSISKPRGVELHCFADD------------VAITAVAKTIPELQDISNVA 668
Query: 463 LGRVSKWGELNLVQFNPLKTQVCAFTAKKDPFVMAPQFQXVSLQPSXSIGILGVDISSDV 642
+ +W E ++ KT+V +++K M + + V + + ++ LGV I +
Sbjct: 669 ITAAIEWLEKVGLKIAAHKTEVVLLSSRKSVECMRVEVKGVEIASAETLKYLGVLIDRRL 728
Query: 643 QFXSH 657
F +H
Sbjct: 729 SFKAH 733
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 48.0 bits (109), Expect = 2e-05
Identities = 50/184 (27%), Positives = 76/184 (41%), Gaps = 6/184 (3%)
Frame = +1
Query: 127 LWHRALLSKIPSYGIPEGLCKWIASFLDGRSITVV-VXGDCSDTMTINAGVPQGSVLSPT 303
+WH LL K+ +P L + S+L R+ V G+ S T I AGVPQGS L P
Sbjct: 649 VWHEGLLLKLAKI-LPYNLYIILESYLTNRTFEVKDQAGETSRTGQIGAGVPQGSNLGPL 707
Query: 304 LFILYINDMLSIDXMHCYADDXTGD---ARYIGHQSLSRSAVQERRSKLVSEVXNSLGRV 474
L+ ++ +DM + Y T + Y + S + +E N L
Sbjct: 708 LYSIFSSDM---PLPYIYRPSPTQRIMLSTYADDTIVLSSDTLATAATRNNE--NYLKTF 762
Query: 475 SKWGELNLVQFNPLKTQVCAFTAKKD--PFVMAPQFQXVSLQPSXSIGILGVDISSDVQF 648
S W + + N KT FT K D M + + +++ LGV + S +
Sbjct: 763 SDWADKWGISVNAAKTGHVIFTLKNDLPTNSMNVKIKGQTIKKESKQSYLGVTLDSKLTL 822
Query: 649 XSHL 660
SH+
Sbjct: 823 SSHV 826
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 48.0 bits (109), Expect = 2e-05
Identities = 27/68 (39%), Positives = 35/68 (51%)
Frame = +1
Query: 127 LWHRALLSKIPSYGIPEGLCKWIASFLDGRSITVVVXGDCSDTMTINAGVPQGSVLSPTL 306
+WH L KI +P + S+L+GR V S + AGVPQGSVL P L
Sbjct: 592 VWHIGLQLKIKQT-LPAPYFGLLKSYLEGRRFAVRFHSAISTEHNVAAGVPQGSVLGPLL 650
Query: 307 FILYINDM 330
+ LY +DM
Sbjct: 651 YCLYSHDM 658
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial cds.
).
Length = 964
Score = 47.2 bits (107), Expect = 3e-05
Identities = 45/181 (24%), Positives = 74/181 (40%), Gaps = 3/181 (1%)
Frame = +1
Query: 127 LWHRALLSKIPSYGIPEGLCKWIASFLDGRSITVV-VXGDCSDTMTINAGVPQGSVLSPT 303
+WH LL K+ +P L + S+L R+ V G+ S I AGVPQGS L P
Sbjct: 521 VWHEGLLLKLAKI-LPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPI 579
Query: 304 LFILYINDMLSIDXMHCYADDXTGDARYIGHQSLSRSAVQERRSKLVSEVXNSLGRVSKW 483
L+ ++ +DM H + + Y + S + + +E N L S W
Sbjct: 580 LYSIFSSDMPLPHIYHPSPTERIMLSTYADDTIVLSSDILATAATRNNE--NYLKTFSDW 637
Query: 484 GELNLVQFNPLKTQVCAFTAKKD--PFVMAPQFQXVSLQPSXSIGILGVDISSDVQFXSH 657
+ + N KT +T K D + + + +++ LGV + S + H
Sbjct: 638 ADKWGISVNAAKTGHVIYTLKNDIPTNLKTMKIKGQAIKKESKQSYLGVILDSKLTLSPH 697
Query: 658 L 660
+
Sbjct: 698 V 698
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 47.2 bits (107), Expect = 3e-05
Identities = 45/181 (24%), Positives = 74/181 (40%), Gaps = 3/181 (1%)
Frame = +1
Query: 127 LWHRALLSKIPSYGIPEGLCKWIASFLDGRSITVV-VXGDCSDTMTINAGVPQGSVLSPT 303
+WH LL K+ +P L + S+L R+ V G+ S I AGVPQGS L P
Sbjct: 637 VWHEGLLLKLAKI-LPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPI 695
Query: 304 LFILYINDMLSIDXMHCYADDXTGDARYIGHQSLSRSAVQERRSKLVSEVXNSLGRVSKW 483
L+ ++ +DM H + + Y + S + + +E N L S W
Sbjct: 696 LYSIFSSDMPLPHIYHPSPTERIMLSTYADDTIVLSSDILATAATRNNE--NYLKTFSDW 753
Query: 484 GELNLVQFNPLKTQVCAFTAKKD--PFVMAPQFQXVSLQPSXSIGILGVDISSDVQFXSH 657
+ + N KT +T K D + + + +++ LGV + S + H
Sbjct: 754 ADKWGISVNAAKTGHVIYTLKNDIPTNLKTMKIKGQAIKKESKQSYLGVILDSKLTLSPH 813
Query: 658 L 660
+
Sbjct: 814 V 814
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 47.2 bits (107), Expect = 3e-05
Identities = 45/181 (24%), Positives = 74/181 (40%), Gaps = 3/181 (1%)
Frame = +1
Query: 127 LWHRALLSKIPSYGIPEGLCKWIASFLDGRSITVV-VXGDCSDTMTINAGVPQGSVLSPT 303
+WH LL K+ +P L + S+L R+ V G+ S I AGVPQGS L P
Sbjct: 637 VWHEGLLLKLAKI-LPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPI 695
Query: 304 LFILYINDMLSIDXMHCYADDXTGDARYIGHQSLSRSAVQERRSKLVSEVXNSLGRVSKW 483
L+ ++ +DM H + + Y + S + + +E N L S W
Sbjct: 696 LYSIFSSDMPLPHIYHPSPTERIMLSTYADDTIVLSSDILATAATRNNE--NYLKTFSDW 753
Query: 484 GELNLVQFNPLKTQVCAFTAKKD--PFVMAPQFQXVSLQPSXSIGILGVDISSDVQFXSH 657
+ + N KT +T K D + + + +++ LGV + S + H
Sbjct: 754 ADKWGISVNAAKTGHVIYTLKNDIPTNLKTMKIKGQAIKKESKQSYLGVILDSKLTLSPH 813
Query: 658 L 660
+
Sbjct: 814 V 814
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 47.2 bits (107), Expect = 3e-05
Identities = 45/181 (24%), Positives = 74/181 (40%), Gaps = 3/181 (1%)
Frame = +1
Query: 127 LWHRALLSKIPSYGIPEGLCKWIASFLDGRSITVV-VXGDCSDTMTINAGVPQGSVLSPT 303
+WH LL K+ +P L + S+L R+ V G+ S I AGVPQGS L P
Sbjct: 599 VWHEGLLLKLAKI-LPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPI 657
Query: 304 LFILYINDMLSIDXMHCYADDXTGDARYIGHQSLSRSAVQERRSKLVSEVXNSLGRVSKW 483
L+ ++ +DM H + + Y + S + + +E N L S W
Sbjct: 658 LYSIFSSDMPLPHIYHPSPTERIMLSTYADDTIVLSSDILATAATRNNE--NYLKTFSDW 715
Query: 484 GELNLVQFNPLKTQVCAFTAKKD--PFVMAPQFQXVSLQPSXSIGILGVDISSDVQFXSH 657
+ + N KT +T K D + + + +++ LGV + S + H
Sbjct: 716 ADKWGISVNAAKTGHVIYTLKNDIPTNLKTMKIKGQAIKKESKQSYLGVILDSKLTLSPH 775
Query: 658 L 660
+
Sbjct: 776 V 776
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 47.2 bits (107), Expect = 3e-05
Identities = 45/181 (24%), Positives = 74/181 (40%), Gaps = 3/181 (1%)
Frame = +1
Query: 127 LWHRALLSKIPSYGIPEGLCKWIASFLDGRSITVV-VXGDCSDTMTINAGVPQGSVLSPT 303
+WH LL K+ +P L + S+L R+ V G+ S I AGVPQGS L P
Sbjct: 637 VWHEGLLLKLAKI-LPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPI 695
Query: 304 LFILYINDMLSIDXMHCYADDXTGDARYIGHQSLSRSAVQERRSKLVSEVXNSLGRVSKW 483
L+ ++ +DM H + + Y + S + + +E N L S W
Sbjct: 696 LYSIFSSDMPLPHIYHPSPTERIMLSTYADDTIVLSSDILATAATRNNE--NYLKTFSDW 753
Query: 484 GELNLVQFNPLKTQVCAFTAKKD--PFVMAPQFQXVSLQPSXSIGILGVDISSDVQFXSH 657
+ + N KT +T K D + + + +++ LGV + S + H
Sbjct: 754 ADKWGISVNAAKTGHVIYTLKNDIPTNLKTMKIKGQAIKKESKQSYLGVILDSKLTLSPH 813
Query: 658 L 660
+
Sbjct: 814 V 814
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 46.8 bits (106), Expect = 4e-05
Identities = 51/183 (27%), Positives = 76/183 (41%), Gaps = 5/183 (2%)
Frame = +1
Query: 127 LWHRALLSKIPSYGIPEGLCKWIASFLDGRSITVV-VXGDCSDTMTINAGVPQGSVLSPT 303
+WH LL K+ +P L + S+L R+ V G+ S T I AGVPQGS L P
Sbjct: 637 VWHEGLLLKLAKI-LPYNLYIILESYLTNRTFEVKDQAGETSRTGQIGAGVPQGSNLGPL 695
Query: 304 LFILYINDMLSIDXMHCYADDXTGDARYIGHQSLSRSAVQERRSKLVSEVXNSLGRVSKW 483
L+ ++ +DM + + Y + S + +E N L S W
Sbjct: 696 LYSIFSSDMPLPYIYRPSPTERIMLSTYADDTIVLSSDTLATAATRNNE--NYLKSFSDW 753
Query: 484 GELNLVQFNPLKTQVCAFTAKKD-PF---VMAPQFQXVSLQPSXSIGILGVDISSDVQFX 651
+ + N KT FT K D P M + Q + ++ S LGV + S +
Sbjct: 754 ADKWGISVNAAKTGHVIFTLKNDLPTSLRTMKIKGQVIKIESKQS--YLGVILDSKLTLS 811
Query: 652 SHL 660
SH+
Sbjct: 812 SHV 814
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p protein.
Length = 888
Score = 46.0 bits (104), Expect = 7e-05
Identities = 52/187 (27%), Positives = 75/187 (40%), Gaps = 6/187 (3%)
Frame = +1
Query: 127 LWHRALLSKIPSYGIPEGLCKWIASFLDGRSITVVVXGDCSDTMTINAGVPQGSVLSPTL 306
+W LL KI +P+ K + S+L + S I AGVPQGSVL P L
Sbjct: 588 VWLDGLLFKIIKL-LPQNTHKLLKSYLYNTVFAIRCDTSTSRDCAIEAGVPQGSVLGPIL 646
Query: 307 FILYINDMLSID---XMHCYADDXTGDARYIGHQSLSRSAVQERRSKLVSEVXNSLGRVS 477
+ LY D ID +ADD LSRS + + L+S L V
Sbjct: 647 YTLYTAD-FPIDYNLTTSTFADDTA---------ILSRSKCPIKATALLS---RHLTSVE 693
Query: 478 KWGELNLVQFNPLKTQVCAFTAKKD---PFVMAPQFQXVSLQPSXSIGILGVDISSDVQF 648
+W + N K + FT K P V+ + + + + LGV + + +
Sbjct: 694 RWLADWRISINVQKCKQVTFTLNKQTCPPLVL----NNICIPQADEVTYLGVHLDRRLTW 749
Query: 649 XSHLEGK 669
H+E K
Sbjct: 750 RKHIEAK 756
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 46.0 bits (104), Expect = 7e-05
Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 2/115 (1%)
Frame = +1
Query: 139 ALLSKIPSYGIPEGLCKWIASFLDGRSITVVVXGDCSDTMTINAGVPQGSVLSPTLFILY 318
A+L ++ +GI L I +F+ RS V + S++ ++ G+PQGS LS LF++
Sbjct: 596 AVLCRLERWGIGPRLYNLIKAFMTNRSFRVRINNVTSNSHILHNGIPQGSPLSVVLFMIA 655
Query: 319 INDMLSIDXMH--CYADDXTGDARYIGHQSLSRSAVQERRSKLVSEVXNSLGRVS 477
I D+ I H Y DA I + + + V+E+ +++ E+ NS G S
Sbjct: 656 IEDINDIVTRHKDIYISLYADDA-IIFTKIKNINTVREKFLEILQEI-NSWGATS 708
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 43.6 bits (98), Expect = 3e-04
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Frame = +1
Query: 139 ALLSKIPSYGIPEGLCKWIASFLDGRSITVVVXGDCSDTMTINAGVPQGSVLSPTLFILY 318
+++ ++ + + K+I +F+ R ITV V S + + G+PQGS +S LF++
Sbjct: 588 SIIQQLQEWKTGPKIIKYIKNFMSNRKITVRVGPHTSSPLPLFNGIPQGSPISVILFLIA 647
Query: 319 INDMLSIDXMH------CYADD 366
N + +I +H YADD
Sbjct: 648 FNKLSNIISLHKEIKFNAYADD 669
>X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type II retrotransposable
element R2Dm. ).
Length = 1057
Score = 37.9 bits (84), Expect = 0.017
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = +1
Query: 127 LWHRALLSKIPSYGIPEGLCKWIASFLDGRSITVVVXGDCSDTMTINAGVPQGSVLSPTL 306
L H ++ + +YG P+G ++ + +G ++ G S+ GV QG LSP L
Sbjct: 490 LSHASIYDTLRAYGAPKGFVDYVQNTYEGGGTSLNGDGWSSEEFVPARGVKQGDPLSPIL 549
Query: 307 FILYINDML 333
F L ++ +L
Sbjct: 550 FNLVMDRLL 558
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 32.7 bits (71), Expect = 0.65
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 3/177 (1%)
Frame = +1
Query: 139 ALLSKIPSYGIPEGLCKWIASFLDGRSITVVVXGDCSDTMTINAGVPQGSVLSPTLFILY 318
A LS++ G E + W SF GR V+ + + + G PQGS+ P ++ +
Sbjct: 590 AALSRLADLGCRE-MGLW-QSFFSGRR-AVIRSSSGTVEVPVTRGCPQGSISGPFIWDIL 646
Query: 319 INDMLSIDXMHCYADDXTGDARYIGHQSLSRSAVQERRSKLVSEVXNSLGRVSKWG-ELN 495
++ +L +C D + + SR+ ++E+ ++L+S V WG E+
Sbjct: 647 MDVLLQRLQPYCQLSAYADDLLLL-VEGNSRAVLEEKGAQLMS-------IVETWGAEVG 698
Query: 496 LVQFNPLKTQVCAFTAKKDPFVMAP--QFQXVSLQPSXSIGILGVDISSDVQFXSHL 660
+ L T K AP +F +L S LG+ +S ++F +H+
Sbjct: 699 ----DCLSTSKTVIMLLKGALRRAPTVRFAGRNLPYVRSCRYLGITVSEGMKFLTHI 751
>BT004884-1|AAO45240.1| 368|Drosophila melanogaster GH09623p
protein.
Length = 368
Score = 31.9 bits (69), Expect = 1.1
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = -1
Query: 618 KYPDTXGRLQGYSLELRRHD--KGVLLGSERANLCL*GVELNQVQFTPFGDSPQRVXHFR 445
+Y D +L+ ++EL D + LGSE +L V+F G +P+R+ +F
Sbjct: 40 RYSDGTVKLRNSNIELMDQDILYHLALGSESHDL---QEMFGDVKFVCMGGTPKRMENFA 96
Query: 444 HKF*SSLLHRAPRETLMADIS 382
H + + ++ P T + DIS
Sbjct: 97 HFIMNEIGYKLPAGTQLQDIS 117
>AE014297-4026|AAF56642.2| 368|Drosophila melanogaster CG6330-PA,
isoform A protein.
Length = 368
Score = 31.9 bits (69), Expect = 1.1
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = -1
Query: 618 KYPDTXGRLQGYSLELRRHD--KGVLLGSERANLCL*GVELNQVQFTPFGDSPQRVXHFR 445
+Y D +L+ ++EL D + LGSE +L V+F G +P+R+ +F
Sbjct: 40 RYSDGTVKLRNSNIELMDQDILYHLALGSESHDL---QEMFGDVKFVCMGGTPKRMENFA 96
Query: 444 HKF*SSLLHRAPRETLMADIS 382
H + + ++ P T + DIS
Sbjct: 97 HFIMNEIGYKLPAGTQLQDIS 117
>AE014297-4025|AAN14095.1| 347|Drosophila melanogaster CG6330-PB,
isoform B protein.
Length = 347
Score = 31.5 bits (68), Expect = 1.5
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = -1
Query: 618 KYPDTXGRLQGYSLELRRHD--KGVLLGSERANLCL*GVELNQVQFTPFGDSPQRVXHFR 445
+Y D +L+ ++EL D + LGSE +L V+F G +P+R+ +F
Sbjct: 19 EYSDGTVKLRNSNIELMDQDILYHLALGSESHDL---QEMFGDVKFVCMGGTPKRMENFA 75
Query: 444 HKF*SSLLHRAPRETLMADIS 382
H + + ++ P T + DIS
Sbjct: 76 HFIMNEIGYKLPAGTQLQDIS 96
>AY071740-1|AAL49362.1| 184|Drosophila melanogaster RH47344p
protein.
Length = 184
Score = 31.1 bits (67), Expect = 2.0
Identities = 29/134 (21%), Positives = 54/134 (40%), Gaps = 1/134 (0%)
Frame = +1
Query: 262 INAGVPQGSVLSPTLFILYINDMLSIDXMHCYADDXTGDARYIGHQSLSRSAVQERRSKL 441
+ GVPQGSVL P L+ + +L + + G + +G V ++
Sbjct: 47 VTGGVPQGSVLGPLLWNTMYDGILRLPLV--------GRSEIVGFADDVALLVVDKYPGK 98
Query: 442 VSEVXN-SLGRVSKWGELNLVQFNPLKTQVCAFTAKKDPFVMAPQFQXVSLQPSXSIGIL 618
E+ N ++ + W ++ P KT+ +++K + + S +I L
Sbjct: 99 AEEMCNRNIRAIEHWLSSMGLELAPEKTKAVLISSRKAVETATVEVGGTLVSSSRAIKYL 158
Query: 619 GVDISSDVQFXSHL 660
V I + + F HL
Sbjct: 159 EVMIDTRLSFREHL 172
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,397,596
Number of Sequences: 53049
Number of extensions: 807071
Number of successful extensions: 2202
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 2085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2199
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4065385896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -