Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP18_FL5_C05
(849 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 60 3e-09
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 56 3e-08
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 54 1e-07
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 46 3e-05
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ... 34 0.11
AC090999-1|AAK26146.1| 390|Caenorhabditis elegans Hypothetical ... 31 1.0
Z81118-3|CAB03325.1| 346|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 29 3.2
Z78419-9|CAB01707.1| 1153|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z73907-3|CAA98126.1| 1153|Caenorhabditis elegans Hypothetical pr... 28 7.3
AL117203-21|CAN86632.1| 171|Caenorhabditis elegans Hypothetical... 28 7.3
AL117203-20|CAB55118.1| 244|Caenorhabditis elegans Hypothetical... 28 7.3
Z81481-9|CAD54126.1| 587|Caenorhabditis elegans Hypothetical pr... 28 9.6
Z81474-8|CAB03905.2| 587|Caenorhabditis elegans Hypothetical pr... 28 9.6
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 59.7 bits (138), Expect = 3e-09
Identities = 59/205 (28%), Positives = 94/205 (45%), Gaps = 13/205 (6%)
Frame = +1
Query: 130 WHRALLSKIPS------YGIPEGLCKWIASFLDGRSITVVVXGDCS-DTMTINAGVPQGS 288
W +A++ IP +G+ C W FL+ R+ +V + S ++ I++GVPQGS
Sbjct: 826 WKKAIIIPIPKKGKLAKFGLDSLTCSWYKEFLENRTFSVKINKFVSKNSYPISSGVPQGS 885
Query: 289 VLSPTLFILYINDMLSID-----XMHCYADDXTGDARYIGHQSLSRSAVQERRSKLVSEV 453
V P LFIL+IN++L ID + C+ADD I H + +
Sbjct: 886 VSGPLLFILFINNLL-IDLAPTINISCFADDVK-----IFHTD-------------PTII 926
Query: 454 XNSLGRVSKWGELNLVQFNPLKTQVCAF-TAKKDPFVMAPQFQXVSLQPSXSIGILGVDI 630
NS+ + W +LN + P K+ + A T K+ + V + PS ++ LG+
Sbjct: 927 QNSIDIIVSWSKLNELPLAPTKSALLALGTRNKN---QSYSVDGVPITPSSTVRDLGLIT 983
Query: 631 SSDVQFXSHLEGKXXLASKMLGSPQ 705
++F H+ LA ML S Q
Sbjct: 984 DCKLKFEHHIVKVSCLA--MLRSKQ 1006
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 56.0 bits (129), Expect = 3e-08
Identities = 33/82 (40%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Frame = +1
Query: 133 HRALLSKIPSYGIPEGLCKWIASFLDGRSITVVVXGDCSDTMTINAGVPQGSVLSPTLFI 312
H LL K+ S + L W+ FL RS V + S GVPQG+VLSP LF
Sbjct: 30 HDLLLDKLVSLRKNKNLLIWVNEFLSNRSFRVRIGQTLSSRKFATCGVPQGAVLSPLLFG 89
Query: 313 LYINDMLSI--DXMHC--YADD 366
+Y+ND+ SI + + C +ADD
Sbjct: 90 IYVNDISSILPEKVACKQFADD 111
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 54.4 bits (125), Expect = 1e-07
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Frame = +1
Query: 133 HRALLSKIPSYGIPEGLCKWIASFLDGRSITVVVXGDCSDTM-TINAGVPQGSVLSPTLF 309
H LL K+ +GI C W FL R+ +V V + I++GVP+GSV P LF
Sbjct: 9 HSLLLQKLHDFGINPLFCNWFHDFLSSRTFSVKVNNHIDPNIHPISSGVPKGSVSGPFLF 68
Query: 310 ILYINDML 333
+++IN +L
Sbjct: 69 LIFINSLL 76
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 46.0 bits (104), Expect = 3e-05
Identities = 30/75 (40%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +1
Query: 166 GIPEGLCKWIASFLDGRSITVVVXGDCSDTMTINAGVPQGSVLSPTLFILYINDM-LSID 342
GI + W+ ++L R I S T+ GVPQGSV+SP LF Y+ DM D
Sbjct: 497 GIEPKIKLWLGNYLHKRLIRTSHDNHWSKWHTLLGGVPQGSVISPNLFTFYLKDMPTQQD 556
Query: 343 XM-HCYADDXTGDAR 384
M YADD + AR
Sbjct: 557 TMLISYADDMSIIAR 571
>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
protein Y113G7B.12 protein.
Length = 1042
Score = 34.3 bits (75), Expect = 0.11
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +1
Query: 133 HRALLSKIPSYGIPEGLCKWIASFLDGRSITVVVXGDC-SDTMTINAGVPQGSVLSPTLF 309
H L+SK+ + + L W + ++ +V V S+ G P+GS +F
Sbjct: 903 HEFLISKLNDFNVHPTLRNWFRKLMSPKTFSVQVNDHLESEKHNCQIGAPRGSESRQFMF 962
Query: 310 ILYINDML 333
+++IN +L
Sbjct: 963 LVFINSLL 970
>AC090999-1|AAK26146.1| 390|Caenorhabditis elegans Hypothetical
protein Y82E9BR.8 protein.
Length = 390
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 329 MSLIYRMKSVGESTEPCGTPALMVMVSEQ 243
+SL KS GE T+PCGTP + SE+
Sbjct: 50 ISLTNMPKSTGERTDPCGTPHTAFLGSEK 78
>Z81118-3|CAB03325.1| 346|Caenorhabditis elegans Hypothetical
protein T10G3.2 protein.
Length = 346
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = -2
Query: 437 FDRLSCTALRERL*WPIYRASPVXSSA*QCMXSIDSMSLIYRMKSVGESTEPCGTPA 267
F ++ C +LR R P+ R+ P+ S S+ ++ ++ M GE+ P G A
Sbjct: 283 FSQMCCNSLRRR---PVRRSHPISPSPGTSPSSVVTIQNVFGMTLSGEANGPAGQEA 336
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/61 (32%), Positives = 26/61 (42%)
Frame = -1
Query: 237 VYNDCDAPPIQKASDPLAETLGDSVRWYLRQKCPMPEPCRRPSRYQGSQQEPRPCFPRLQ 58
V APP+Q+A VR Q PMP + PS Q +Q P+P P+
Sbjct: 353 VVQQAPAPPVQQAPPKPTPQQAPPVR----QNPPMPAVQQAPSSQQATQAPPKPA-PQQA 407
Query: 57 P 55
P
Sbjct: 408 P 408
>Z78419-9|CAB01707.1| 1153|Caenorhabditis elegans Hypothetical
protein F29D11.2 protein.
Length = 1153
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -2
Query: 647 NWTSLEMSTPSIPILLEGCRDTXWNC 570
NW M +LL CRDT W C
Sbjct: 265 NWPVDAMKHSPRELLLRSCRDTAWEC 290
>Z73907-3|CAA98126.1| 1153|Caenorhabditis elegans Hypothetical
protein F29D11.2 protein.
Length = 1153
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -2
Query: 647 NWTSLEMSTPSIPILLEGCRDTXWNC 570
NW M +LL CRDT W C
Sbjct: 265 NWPVDAMKHSPRELLLRSCRDTAWEC 290
>AL117203-21|CAN86632.1| 171|Caenorhabditis elegans Hypothetical
protein Y48C3A.18b protein.
Length = 171
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 248 LIP*PLTLAFHKVRCSPPRFSSCISMTCCLLIXC 349
L+P P+TL F ++ C P F+ + C + C
Sbjct: 17 LLPGPVTLMFERLPCLPAEFNPGVVNVACRVPDC 50
>AL117203-20|CAB55118.1| 244|Caenorhabditis elegans Hypothetical
protein Y48C3A.18a protein.
Length = 244
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 248 LIP*PLTLAFHKVRCSPPRFSSCISMTCCLLIXC 349
L+P P+TL F ++ C P F+ + C + C
Sbjct: 90 LLPGPVTLMFERLPCLPAEFNPGVVNVACRVPDC 123
>Z81481-9|CAD54126.1| 587|Caenorhabditis elegans Hypothetical
protein C18D4.8 protein.
Length = 587
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -1
Query: 315 QDEKRGGEHRTLWNASVNGHGIRAVTVYNDCDAPPIQKASDPLAETLGDSVRWY 154
QDEK L + H +RA +Y+ + P+++A + ET+G + Y
Sbjct: 337 QDEKMKNLAAVL---KADNHALRACILYDYLEGGPVEEAYEVFCETVGQNSMGY 387
>Z81474-8|CAB03905.2| 587|Caenorhabditis elegans Hypothetical
protein C18D4.8 protein.
Length = 587
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -1
Query: 315 QDEKRGGEHRTLWNASVNGHGIRAVTVYNDCDAPPIQKASDPLAETLGDSVRWY 154
QDEK L + H +RA +Y+ + P+++A + ET+G + Y
Sbjct: 337 QDEKMKNLAAVL---KADNHALRACILYDYLEGGPVEEAYEVFCETVGQNSMGY 387
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,677,933
Number of Sequences: 27780
Number of extensions: 390669
Number of successful extensions: 972
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -