Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP18_FL5_C03
(892 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.38
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.89
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 2.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 2.7
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4... 27 2.7
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace... 27 3.6
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 26 8.3
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.3 bits (65), Expect = 0.38
Identities = 23/83 (27%), Positives = 23/83 (27%), Gaps = 4/83 (4%)
Frame = +3
Query: 651 PSPXWXPPPXXPVXQXGXPRTXGXXPXP----PGSPWXRGXXPXXXXXTIPSXGXLXRLX 818
P P P P G P P P P P G P IP
Sbjct: 1042 PVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAA 1101
Query: 819 PXXPPPSXXXXPAPPXPXAPXPP 887
P P PS P P AP P
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVP 1124
Score = 27.9 bits (59), Expect = 2.1
Identities = 21/81 (25%), Positives = 26/81 (32%), Gaps = 2/81 (2%)
Frame = +3
Query: 654 SPXWXPPPXXPVXQXGXPRTXGXXPXPPGSPWXR--GXXPXXXXXTIPSXGXLXRLXPXX 827
+P PPP P + PP +P + P +P L P
Sbjct: 965 APPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPV 1024
Query: 828 PPPSXXXXPAPPXPXAPXPPP 890
P PS APP P PP
Sbjct: 1025 PLPSAD---APPIPVPSTAPP 1042
Score = 27.9 bits (59), Expect = 2.1
Identities = 22/81 (27%), Positives = 23/81 (28%), Gaps = 1/81 (1%)
Frame = +3
Query: 651 PSPXWXPP-PXXPVXQXGXPRTXGXXPXPPGSPWXRGXXPXXXXXTIPSXGXLXRLXPXX 827
P P PP P V P G P P S P P + P
Sbjct: 1134 PVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSV-AAPPVPAPSSGIPPVPKPAAGVPPVP 1192
Query: 828 PPPSXXXXPAPPXPXAPXPPP 890
PP P P P PPP
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPP 1213
Score = 26.6 bits (56), Expect = 4.7
Identities = 20/81 (24%), Positives = 23/81 (28%), Gaps = 1/81 (1%)
Frame = +3
Query: 651 PSPXWXPPPXXPVXQXGXPRTXGXXPX-PPGSPWXRGXXPXXXXXTIPSXGXLXRLXPXX 827
P P PP P P++ P PP P P + P
Sbjct: 1035 PVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPV 1094
Query: 828 PPPSXXXXPAPPXPXAPXPPP 890
P PS P P A P P
Sbjct: 1095 PKPSVAAPPVPKPSVAVPPVP 1115
Score = 26.2 bits (55), Expect = 6.3
Identities = 22/88 (25%), Positives = 22/88 (25%)
Frame = +3
Query: 624 PSXGGXXXXPSPXWXPPPXXPVXQXGXPRTXGXXPXPPGSPWXRGXXPXXXXXTIPSXGX 803
P G P P PP P P PP G P
Sbjct: 1134 PVPSGAPPVPKPSVAAPPV-PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVP 1192
Query: 804 LXRLXPXXPPPSXXXXPAPPXPXAPXPP 887
P P PS P PP AP P
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.1 bits (62), Expect = 0.89
Identities = 16/53 (30%), Positives = 18/53 (33%)
Frame = +3
Query: 732 PPGSPWXRGXXPXXXXXTIPSXGXLXRLXPXXPPPSXXXXPAPPXPXAPXPPP 890
PP P P +P + P PPP PP P P PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP--PPPPP 783
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.7 bits (61), Expect = 1.2
Identities = 21/75 (28%), Positives = 24/75 (32%), Gaps = 2/75 (2%)
Frame = +3
Query: 672 PPXXPVXQXGXPRTXGXXPXPPGSP-WXRGXXPXXXXXTIPSXGXLXRLXPXXPPPSXXX 848
PP + P PP +P P P+ L P PP
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGM 463
Query: 849 XPAPPXPXA-PXPPP 890
APP P A P PPP
Sbjct: 464 PAAPPLPPAAPAPPP 478
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.9 bits (59), Expect = 2.1
Identities = 25/84 (29%), Positives = 29/84 (34%), Gaps = 5/84 (5%)
Frame = +3
Query: 654 SPXWXPPPXXPVXQXGXPRTXGXXPX-PPGSPWXRGXXPXXXXXTIPSX--GXLXRLXPX 824
+P P P P + P + P PP SP P IPS P
Sbjct: 123 APPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPP-IPSSLPPPAQPAAPV 181
Query: 825 XPPPSXXXXPA--PPXPXAPXPPP 890
PPS P+ PP P PPP
Sbjct: 182 KSPPSAPSLPSAVPPMPPKVPPPP 205
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +3
Query: 798 GXLXRLXPXXPPPSXXXXPAPPXPXAPXPPP 890
G + P PP APP AP PPP
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPP 1709
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +3
Query: 828 PPPSXXXXPAPPXPXAPXPP 887
PPPS PA P P AP PP
Sbjct: 1716 PPPSAPPMPAGP-PSAPPPP 1734
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = +3
Query: 819 PXXPPPSXXXXPAPPXPXAPXPPP 890
P PPP P P P P PP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPP 1728
>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
Did4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 222 VRVHRADTGXSSNELDRQTTELERR 296
+R H+ G + ELDR+ T+L++R
Sbjct: 18 LRAHQRSLGRAERELDRERTKLDQR 42
>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
N-acetylglucosaminyltransferase Alg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 146 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 48
Y ES + D+ + SH+ A +I Q R+G +
Sbjct: 63 YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -3
Query: 368 RLAVPRQASTSVPRTPAKCCSPIHPAFQLSRLSIQF 261
+ +VP +T +P T A S +HP+ L+++ + F
Sbjct: 145 KYSVPELHTTFLPNTNADITSLLHPSTYLNKILLGF 180
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,620,862
Number of Sequences: 5004
Number of extensions: 44487
Number of successful extensions: 162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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