Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP18_FL5_C03
(892 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 34 0.002
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 33 0.003
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 29 0.057
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 29 0.057
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 28 0.13
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 28 0.13
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 28 0.13
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.17
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.17
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.17
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 27 0.17
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 27 0.23
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 26 0.40
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.70
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.70
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.70
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.70
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.70
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 25 0.93
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 24 1.6
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 24 1.6
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 2.8
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 23 3.7
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 22 6.5
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 22 6.5
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 34.3 bits (75), Expect = 0.002
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +1
Query: 94 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIRESESTVRILAXLQ 258
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 259 MNWIDKRLSWNA 294
+ W L+W +
Sbjct: 88 LMWEQSHLTWKS 99
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 33.5 bits (73), Expect = 0.003
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +1
Query: 100 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IRESESTVRILAXLQMNW 267
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 268 IDKRLSWNAG 297
+D+RL++ G
Sbjct: 62 VDRRLAFQGG 71
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 29.1 bits (62), Expect = 0.057
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +3
Query: 429 LSCIKRLDXSXPISMQXXXWPNDMHTCTXXFGSXMRNTDE 548
+SC+ + + WP D H C FGS + + +E
Sbjct: 157 VSCVPSVKHVAKCATDFSSWPYDTHRCRINFGSWVHSGEE 196
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 29.1 bits (62), Expect = 0.057
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 323 VSSERLWRPDVVLLNAA-ATTAGDYXLRARVSNNXSAL 433
+ RLW+PDV++ N+A G Y V NN + L
Sbjct: 100 IPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGTCL 137
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 27.9 bits (59), Expect = 0.13
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 323 VSSERLWRPDVVLLNAA-ATTAGDYXLRARVSNNXSAL 433
++ +LW+PD+++ N+A G Y V++N S L
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCL 168
Score = 25.0 bits (52), Expect = 0.93
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +1
Query: 121 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILAXLQMNWIDKRLS 285
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 286 WN 291
WN
Sbjct: 118 WN 119
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 27.9 bits (59), Expect = 0.13
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 323 VSSERLWRPDVVLLNAA-ATTAGDYXLRARVSNNXSAL 433
++ +LW+PD+++ N+A G Y V++N S L
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCL 168
Score = 25.0 bits (52), Expect = 0.93
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +1
Query: 121 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILAXLQMNWIDKRLS 285
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 286 WN 291
WN
Sbjct: 118 WN 119
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 27.9 bits (59), Expect = 0.13
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 305 GCSTWLVSSERLWRPDVVLLNAA 373
G T V SE +W PD+VL N A
Sbjct: 91 GVDTLHVPSEHIWLPDIVLYNNA 113
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 27.5 bits (58), Expect = 0.17
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 323 VSSERLWRPDVVLLNAA-ATTAGDYXLRARVSNNXSAL 433
++ +LW+PD+++ N+A G Y V++N S L
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHNGSCL 100
Score = 24.6 bits (51), Expect = 1.2
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +1
Query: 211 NIRESESTVRILAXLQMNWIDKRLSWN 291
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 27.5 bits (58), Expect = 0.17
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 323 VSSERLWRPDVVLLNAA 373
V S+ +WRPD+VL N A
Sbjct: 105 VPSDHIWRPDIVLYNNA 121
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 27.5 bits (58), Expect = 0.17
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 323 VSSERLWRPDVVLLNAA 373
V S+ +WRPD+VL N A
Sbjct: 105 VPSDHIWRPDIVLYNNA 121
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 27.5 bits (58), Expect = 0.17
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 323 VSSERLWRPDVVLLNAA 373
V S+ +WRPD+VL N A
Sbjct: 101 VPSDHIWRPDIVLYNNA 117
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 27.1 bits (57), Expect = 0.23
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 299 EWGCSTWL-VSSERLWRPDVVLLNAA 373
E+G T L V SE +W PD+VL N A
Sbjct: 88 EYGGVTELYVPSEHIWLPDIVLYNNA 113
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 26.2 bits (55), Expect = 0.40
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 305 GCSTWLVSSERLWRPDVVLLNAA 373
G V SE +W PD+VL N A
Sbjct: 104 GVEMLYVPSENIWLPDIVLYNNA 126
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.70
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 323 VSSERLWRPDVVLLNAA-ATTAGDYXLRARVSNNXSAL 433
++ +LW+PD+++ N+A G Y V+++ S L
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCL 100
Score = 24.6 bits (51), Expect = 1.2
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +1
Query: 211 NIRESESTVRILAXLQMNWIDKRLSWN 291
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.70
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 323 VSSERLWRPDVVLLNAA-ATTAGDYXLRARVSNNXSAL 433
++ +LW+PD+++ N+A G Y V+++ S L
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCL 100
Score = 24.6 bits (51), Expect = 1.2
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +1
Query: 211 NIRESESTVRILAXLQMNWIDKRLSWN 291
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.70
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 323 VSSERLWRPDVVLLNAA-ATTAGDYXLRARVSNNXSAL 433
++ +LW+PD+++ N+A G Y V+++ S L
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCL 100
Score = 24.6 bits (51), Expect = 1.2
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +1
Query: 211 NIRESESTVRILAXLQMNWIDKRLSWN 291
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.70
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 323 VSSERLWRPDVVLLNAA-ATTAGDYXLRARVSNNXSAL 433
++ +LW+PD+++ N+A G Y V+++ S L
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCL 100
Score = 24.6 bits (51), Expect = 1.2
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +1
Query: 211 NIRESESTVRILAXLQMNWIDKRLSWN 291
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.70
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 323 VSSERLWRPDVVLLNAA-ATTAGDYXLRARVSNNXSAL 433
++ +LW+PD+++ N+A G Y V+++ S L
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCL 100
Score = 24.6 bits (51), Expect = 1.2
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +1
Query: 211 NIRESESTVRILAXLQMNWIDKRLSWN 291
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 25.0 bits (52), Expect = 0.93
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 332 ERLWRPDVVLLNAAATTAGDYXLR 403
+++W+PD+VL N A G+Y +R
Sbjct: 106 DKVWKPDIVLFNNA---DGNYEVR 126
Score = 22.6 bits (46), Expect = 4.9
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 172 KIVVNLTL-HLRHANIRESESTVRILAXLQMNWIDKRLSWN 291
K+ VN L ++ N+ E ++ L+ W D +L W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWD 91
Score = 22.2 bits (45), Expect = 6.5
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +3
Query: 486 WPNDMHTCTXXFGSXMRNTDE 548
+P D TC FGS N D+
Sbjct: 158 FPFDQQTCIMKFGSWTFNGDQ 178
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 24.2 bits (50), Expect = 1.6
Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +1
Query: 100 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILAXLQMNW 267
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 268 IDKRLSW 288
D RL++
Sbjct: 68 TDPRLAF 74
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 24.2 bits (50), Expect = 1.6
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 323 VSSERLWRPDVVLLNAA 373
V R+WRPD +L N A
Sbjct: 82 VPYNRVWRPDTILYNNA 98
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 23.4 bits (48), Expect = 2.8
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +3
Query: 624 PSXGGXXXXPSPXWXPPPXXPVXQXGXPRTXGXXPXPPGSP 746
PS G PSP P Q G P P P G P
Sbjct: 16 PSSGAPGPQPSPHQSPQ----APQRGSPPNPSQGPPPGGPP 52
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.0 bits (47), Expect = 3.7
Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +1
Query: 100 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILAXLQMNW 267
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 268 IDKRLSW 288
D RL++
Sbjct: 68 TDPRLAF 74
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 22.2 bits (45), Expect = 6.5
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +2
Query: 332 ERLWRPDVVLLN 367
ER+WRPD N
Sbjct: 115 ERIWRPDTYFYN 126
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 22.2 bits (45), Expect = 6.5
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +3
Query: 858 PPXPXAPXPPP 890
PP P P PPP
Sbjct: 338 PPKPAPPPPPP 348
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,020
Number of Sequences: 438
Number of extensions: 4271
Number of successful extensions: 41
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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