Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP18_FL5_C02
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   196   2e-51
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   196   2e-51
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    26   5.9  
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    26   5.9  
SPBC336.13c |||mitochondrial inner membrane peptidase complex ca...    26   7.8  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  196 bits (479), Expect = 2e-51
 Identities = 96/186 (51%), Positives = 118/186 (63%)
 Frame = +1

Query: 223 RYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGAIEDKVKWAXXHLEKPIPVDSVFAQD 402
           +YCSVVRV+AHTQ++     QKKAH+MEIQ+NGG++ DKV+WA  H EK + + S F Q+
Sbjct: 153 KYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQN 212

Query: 403 EMIDCIXXXXXXXXXXXXSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVXRAGXKGY 582
           EMID I            +RW TK+LPRKTH+GLRKVACIGAWHP+ V +TV RAG  GY
Sbjct: 213 EMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGY 272

Query: 583 HHRTEMNXKIYRIGQGIHKKDGXXIKNNASTXYXLSXKSITPXGXXPPLWVX*TXFXXIK 762
            HRT++N KIYRIG G   K       NAST +  + K ITP G      V    F  + 
Sbjct: 273 MHRTQLNSKIYRIGAGDDAK-------NASTDFDATEKRITPMGGFVRYGVVENDFVMLN 325

Query: 763 GCCXGP 780
           G   GP
Sbjct: 326 GATPGP 331


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  196 bits (479), Expect = 2e-51
 Identities = 96/186 (51%), Positives = 118/186 (63%)
 Frame = +1

Query: 223 RYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGAIEDKVKWAXXHLEKPIPVDSVFAQD 402
           +YCSVVRV+AHTQ++     QKKAH+MEIQ+NGG++ DKV+WA  H EK + + S F Q+
Sbjct: 153 KYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQN 212

Query: 403 EMIDCIXXXXXXXXXXXXSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVXRAGXKGY 582
           EMID I            +RW TK+LPRKTH+GLRKVACIGAWHP+ V +TV RAG  GY
Sbjct: 213 EMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGY 272

Query: 583 HHRTEMNXKIYRIGQGIHKKDGXXIKNNASTXYXLSXKSITPXGXXPPLWVX*TXFXXIK 762
            HRT++N KIYRIG G   K       NAST +  + K ITP G      V    F  + 
Sbjct: 273 MHRTQLNSKIYRIGAGDDAK-------NASTDFDATEKRITPMGGFVRYGVVENDFVMLN 325

Query: 763 GCCXGP 780
           G   GP
Sbjct: 326 GATPGP 331


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 229 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGAIEDK 339
           C+VV  +  T M+   QRQ K  I +  LNG  +++K
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467


>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 152 SESLLLAFVPIASYCGLSAI 93
           SE +LL     ASYCGLS+I
Sbjct: 110 SEEVLLKEASYASYCGLSSI 129


>SPBC336.13c |||mitochondrial inner membrane peptidase complex
           catalytic subunit 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 180

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +1

Query: 82  ILI*MALNPQYDAIGTNARRRLSLKPVRNGRMSLDANQ 195
           +L+   L  +YD + T   ++LSL PV  G + ++ ++
Sbjct: 89  LLVKRVLGVEYDIMKTRPPKKLSLVPVPEGHVWVEGDE 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,873,777
Number of Sequences: 5004
Number of extensions: 50959
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)