Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP18_FL5_B23
         (839 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029...    34   0.16 
12_01_0524 - 4167867-4168445                                           29   3.5  
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321...    29   6.1  
07_03_1747 + 29188568-29188715,29188793-29189541                       29   6.1  
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468...    28   8.1  
04_01_0530 - 6928528-6929500,6929514-6930964                           28   8.1  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   8.1  
01_01_0517 + 3803740-3806106,3806226-3806312,3806397-3807035,380...    28   8.1  

>05_03_0366 -
           13102147-13102281,13102560-13102739,13102791-13102992,
           13104385-13104575
          Length = 235

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -3

Query: 345 HQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 181
           H P AAA  P VP++    P  L +   S GG GL   S S +  G  + D G+GG
Sbjct: 7   HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61


>12_01_0524 - 4167867-4168445
          Length = 192

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 22/72 (30%), Positives = 32/72 (44%)
 Frame = -3

Query: 342 QPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 163
           QPS+AA  P   + +    +   +  YSH G    +   S + G  +   G GGG P V 
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160

Query: 162 CEERVDHEGQ*C 127
            EE  + E + C
Sbjct: 161 VEEVEEEEEKEC 172


>11_06_0411 -
           23230580-23230795,23231407-23231862,23232142-23232195,
           23232251-23232367
          Length = 280

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 243 VRVHRANTGRSSNELDRQTTELERRGVGLQHLAGVLGTL 359
           V+ H     R S EL+RQ  ELER+G  L+   G L  +
Sbjct: 89  VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127


>07_03_1747 + 29188568-29188715,29188793-29189541
          Length = 298

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +2

Query: 398 PPPGTTLSAPVYLITAPSPA*SAWTLXLQFLCX*TIGPTTCRLARSSS 541
           PPP TT++  V L   P+ A S   +  QF+C      TTC  + S S
Sbjct: 213 PPPTTTMAQHVVL---PTAAASCHQMQDQFVCARAAETTTCCWSESES 257


>09_04_0190 -
           15443764-15443838,15445360-15445458,15446396-15446891,
           15449436-15449479,15449999-15450104,15450243-15450314,
           15450474-15450588,15451182-15451407
          Length = 410

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +3

Query: 249 VHRANTGRSSNELDRQTTELERRGVG 326
           V+ A   +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396


>04_01_0530 - 6928528-6929500,6929514-6930964
          Length = 807

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +3

Query: 78  VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 218
           +SP+LCY+ C   RK+       +L+  +  SGLPP++   S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 427 GRGERSPRRWLQPRLAVPRQASTSVPXTP 341
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


>01_01_0517 + 3803740-3806106,3806226-3806312,3806397-3807035,
            3807118-3807282,3807363-3807657,3807739-3807953,
            3808125-3808430,3808539-3808602,3808735-3808974,
            3809150-3809253
          Length = 1493

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
 Frame = -3

Query: 633  PSHPTXXXGNILYILXSITK----SIWSXL--CILXPELERASLHVVGPIVXLHRNWSXN 472
            P  PT   G +   L  I +     IW  L  C L  E+ R  L +  P++    NWS  
Sbjct: 1331 PQEPTMFEGTVRTNLDPIGEYTDSQIWEALDRCQLGDEVRRKELRLDSPVIENGENWSVG 1390

Query: 471  VQAL 460
             + L
Sbjct: 1391 QRQL 1394


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,041,275
Number of Sequences: 37544
Number of extensions: 464099
Number of successful extensions: 1318
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1316
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)