Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP18_FL5_B22
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    28   1.4  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   2.5  
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1...    27   2.5  
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ...    27   3.3  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   3.3  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    27   4.4  
SPAC10F6.16 |mug134||endosulphine family protein|Schizosaccharom...    27   4.4  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    27   4.4  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    26   5.8  
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    26   5.8  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   5.8  
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    26   7.6  

>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 4   WDDLFMEEIVPLXVSAASAIPSLVNAFSSSKPPQTD 111
           W D+F  + +P+  ++A  IPSL  A   SK P T+
Sbjct: 239 WFDIF--DFIPMIFTSALLIPSLYPALERSKLPFTE 272


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +1

Query: 529 SSHPPLAISATSTRS---SNPRFHTPTTPELNIHFHQSP 636
           S HP  +IS T+T S   S    H PTTP+   HF  +P
Sbjct: 270 SEHPKPSISTTTTGSSYRSAESSHAPTTPD---HFKLTP 305


>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 525 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 406
           I A P   +R     AS+ TP+  T+A+ QQ     GI+R
Sbjct: 9   IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47


>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 534 PPSPGDLGYINPIIKSPIPYTNHPRT*HPFPSIP*TP 644
           PP PGD+ + NP++  P    + P     F   P  P
Sbjct: 218 PPQPGDIVFSNPMLGGPDHKVSQPSETENFLPTPEPP 254


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 260  RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 373
            R+Y  L  T   ++S    + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +2

Query: 599 PPQNLTS--ISINPLNAVLXGVRAGVKASGCHQXLHQRXSPPRHWAWLKGFRPPYFQ 763
           PP +L+    + NP   VL   +  +    C+Q  H R  P    A  + +  PYF+
Sbjct: 33  PPVSLSQGFFNYNPPKFVLDAAKKSIDEVACNQYSHTRGRPSLRKALSEAY-SPYFK 88


>SPAC10F6.16 |mug134||endosulphine family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -3

Query: 623 KWMLSSGVVGVWNRGFDDRVDVAEIA 546
           KWMLS+ ++ + +   + +VDVA+++
Sbjct: 6   KWMLSTTIIAMSSSNSEQKVDVAKLS 31


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 558 YINPIIKSPIPYTNHPRT*HP 620
           Y+ P+ K P+P + H    HP
Sbjct: 609 YLTPLAKKPLPVSGHTNNAHP 629


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +2

Query: 341 IKGYRDAYLVNLEAVVFPSAPGLKIPVTVD 430
           +K  RD YL NLEA  FPS+  +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 761 ENKGGETPLAMPSDEGVXYADGASDDN 681
           +NK GE P    S E    A G+SD+N
Sbjct: 139 KNKNGEEPETSTSVENAESAKGSSDEN 165


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +1

Query: 523 YASSHPPLAISATSTRSSNPRFHTPT 600
           Y SS     IS +ST   N  FH PT
Sbjct: 795 YLSSSSSRTISTSSTNEYNTSFHAPT 820


>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 100 GVWKKRKH*PRREWPKRQKRXKAQF 26
           G WKK +   + EW K ++  KA++
Sbjct: 119 GEWKKAREEDKAEWKKAREEDKAEW 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,138,049
Number of Sequences: 5004
Number of extensions: 60363
Number of successful extensions: 214
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)