Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP18_FL5_B22
(838 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X89894-1|CAA61984.1| 443|Homo sapiens nuclear receptor protein. 31 6.8
S81243-1|AAB36006.1| 684|Homo sapiens CHN protein. 31 6.8
D78579-1|BAA11419.1| 626|Homo sapiens neuron derived orphan rec... 31 6.8
AL359710-3|CAI95139.1| 443|Homo sapiens nuclear receptor subfam... 31 6.8
AL359710-2|CAI95138.1| 626|Homo sapiens nuclear receptor subfam... 31 6.8
AL359710-1|CAM16648.1| 637|Homo sapiens nuclear receptor subfam... 31 6.8
AL358937-4|CAI95320.1| 626|Homo sapiens nuclear receptor subfam... 31 6.8
AL358937-3|CAM22558.1| 637|Homo sapiens nuclear receptor subfam... 31 6.8
BC057851-1|AAH57851.1| 227|Homo sapiens transmembrane emp24 pro... 30 9.0
BC052641-1|AAH52641.1| 227|Homo sapiens transmembrane emp24 pro... 30 9.0
AY191223-1|AAP20105.1| 175|Homo sapiens transformation-related ... 30 9.0
AK074557-1|BAC11058.1| 186|Homo sapiens protein ( Homo sapiens ... 30 9.0
>X89894-1|CAA61984.1| 443|Homo sapiens nuclear receptor protein.
Length = 443
Score = 30.7 bits (66), Expect = 6.8
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 254 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPGLKI 415
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>S81243-1|AAB36006.1| 684|Homo sapiens CHN protein.
Length = 684
Score = 30.7 bits (66), Expect = 6.8
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 254 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPGLKI 415
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 93 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 144
>D78579-1|BAA11419.1| 626|Homo sapiens neuron derived orphan
receptor protein.
Length = 626
Score = 30.7 bits (66), Expect = 6.8
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 254 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPGLKI 415
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-3|CAI95139.1| 443|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 443
Score = 30.7 bits (66), Expect = 6.8
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 254 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPGLKI 415
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-2|CAI95138.1| 626|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 626
Score = 30.7 bits (66), Expect = 6.8
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 254 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPGLKI 415
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-1|CAM16648.1| 637|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 637
Score = 30.7 bits (66), Expect = 6.8
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 254 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPGLKI 415
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 46 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 97
>AL358937-4|CAI95320.1| 626|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 626
Score = 30.7 bits (66), Expect = 6.8
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 254 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPGLKI 415
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL358937-3|CAM22558.1| 637|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 637
Score = 30.7 bits (66), Expect = 6.8
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 254 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPGLKI 415
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 46 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 97
>BC057851-1|AAH57851.1| 227|Homo sapiens transmembrane emp24
protein transport domain containing 4 protein.
Length = 227
Score = 30.3 bits (65), Expect = 9.0
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +2
Query: 257 QRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPGLKIPVTV 427
Q LYF + TE + ++ +P+ + +I YR + V PS PGL + V V
Sbjct: 28 QGLYFHIGETEKRC---FIEEIPDETMVIGNYRTQMWDKQKEVFLPSTPGLGMHVEV 81
>BC052641-1|AAH52641.1| 227|Homo sapiens transmembrane emp24
protein transport domain containing 4 protein.
Length = 227
Score = 30.3 bits (65), Expect = 9.0
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +2
Query: 257 QRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPGLKIPVTV 427
Q LYF + TE + ++ +P+ + +I YR + V PS PGL + V V
Sbjct: 28 QGLYFHIGETEKRC---FIEEIPDETMVIGNYRTQMWDKQKEVFLPSTPGLGMHVEV 81
>AY191223-1|AAP20105.1| 175|Homo sapiens transformation-related
gene 7 protein.
Length = 175
Score = 30.3 bits (65), Expect = 9.0
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +2
Query: 257 QRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPGLKIPVTV 427
Q LYF + TE + ++ +P+ + +I YR + V PS PGL + V V
Sbjct: 17 QGLYFHIGETEKRC---FIEEIPDETMVIGNYRTQMWDKQKEVFLPSTPGLGMHVEV 70
>AK074557-1|BAC11058.1| 186|Homo sapiens protein ( Homo sapiens
cDNA FLJ90076 fis, clone HEMBA1004444, highly similar to
Putative NFkB activating protein HNLF. ).
Length = 186
Score = 30.3 bits (65), Expect = 9.0
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +2
Query: 257 QRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPGLKIPVTV 427
Q LYF + TE + ++ +P+ + +I YR + V PS PGL + V V
Sbjct: 28 QGLYFHIGETEKRC---FIEEIPDETMVIGNYRTQMWDKQKEVFLPSTPGLGMHVEV 81
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,456,645
Number of Sequences: 237096
Number of extensions: 2500245
Number of successful extensions: 5407
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5401
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10538170902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -