Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP18_FL5_B21
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    29   0.65 
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    28   2.0  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    28   2.0  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    27   2.6  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    26   6.1  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 216 VRVHRANTGRSSNELDRQTTXLERR 290
           +R H+ + GR+  ELDR+ T L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 394 RARVSNNGSVSXIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHN 531
           RA +++   +  +KR DI    +   DNW ND+  C  + G  +H+
Sbjct: 588 RAVIAHMLELDPVKRYDIHRVFA---DNWINDISMCHMENGKVIHS 630


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 33  YYSCYPFLLTCAIASAAECENATSLSLMIDSLLATY 140
           +YSC P+LL   I  A+ C+  +  S +ID  L T+
Sbjct: 101 FYSCNPYLLFKGIC-ASSCQIDSYQSSLIDDALETF 135


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 478 WPNDMQTCTFKFGSRMHNXDQMDFVIDKRXYSMFDS 585
           WP D+ T    FG+     D  D + D+  Y M D+
Sbjct: 105 WPQDLYTLNPHFGTEQDLIDLADALHDRGMYLMVDT 140


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 139 YVARSESIMRDSDVAFSHSAALAIAQVRRNG 47
           Y    ES + D+ +  SH+ A +I Q  R+G
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSG 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,947,174
Number of Sequences: 5004
Number of extensions: 55334
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)