Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP18_FL5_B18
(853 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 28 1.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.9
SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit L37|... 27 4.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.9
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.9
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce... 26 5.9
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 26 7.8
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 7.8
SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c... 26 7.8
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +1
Query: 301 SATTIPAFSQIKASH-RQSSHSKPASQPQQDHRSRLTALPGPTARTYTASSRSIQAQSRL 477
S T +PA + + + +QSS S P QP + P P A +Y S++ + L
Sbjct: 290 STTPLPAAASYTSMNMKQSSASHPVLQPPAPSTLQFNPSPSPAAPSYPPVDASVKQAADL 349
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 1.9
Identities = 20/81 (24%), Positives = 37/81 (45%)
Frame = +2
Query: 356 PTASQHRSLNRTIAADSPRFLALRHAPTLPHRAAFKLSLDSPQTSSSTGDNHAAFKLSFD 535
PT S + + +I L+ PT+P + S+ P TS+S+ D +++ L
Sbjct: 223 PTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSS-PLPTT 281
Query: 536 SPQTSSSTGTCKLISARTTIT 598
S ++ST ++ T +T
Sbjct: 282 STSCTTSTSIPPTGNSTTPVT 302
>SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit
L37|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 26.6 bits (56), Expect = 4.5
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = -1
Query: 184 QFICYFNTIIVNTTRRSISTRESNKAEVR*KIIANRKQRYSETYTSRVSVVASQ 23
QF CY NT+++ ++R S S+ ++ V ++ + Q S+ TS VA++
Sbjct: 20 QFSCYSNTLVLRSSRNS-SSSLVKRSYVSSRVSPKKPQHNSDA-TSSAQKVANK 71
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 5.9
Identities = 27/110 (24%), Positives = 47/110 (42%)
Frame = +2
Query: 263 SQLSDSSSAHQELRLPQSPHSRR*KQVIDSRPTASQHRSLNRTIAADSPRFLALRHAPTL 442
S LS S+S+ Q S S + PT++ L+ + S + + TL
Sbjct: 176 SSLSSSTSSSQP-----SVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTL 230
Query: 443 PHRAAFKLSLDSPQTSSSTGDNHAAFKLSFDSPQTSSSTGTCKLISARTT 592
+ S+ P TSSS+ ++ S S SSS+ + +IS+ ++
Sbjct: 231 TSSSLSTSSI--PSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSS 278
Score = 26.2 bits (55), Expect = 5.9
Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +3
Query: 336 SKSSTVVPQQASIAASTGPSQPTH-RASWPYGTHLHCLIAQHSSSVSTHRRLRAALATIT 512
S SST+ +S ++S+ S + ++S + + + + SS++++ + A+ +
Sbjct: 338 SSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSS 397
Query: 513 QHSSSVSTHR 542
HSSS+S+H+
Sbjct: 398 SHSSSLSSHK 407
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 26.2 bits (55), Expect = 5.9
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +3
Query: 309 HNPRILADKSKSSTVVPQQASIAASTGPSQPTHRASWPYGTHLHCLIAQHSSSVS-THRR 485
+NP+ + S +++ VP+ S + S + T Y H+ +I + S S + RR
Sbjct: 198 NNPKEIEMNSDTTSSVPKSGSTSFSANVTSSTSMVYLLYSVHVDKIIQYYVDSFSVSERR 257
Query: 486 LRAALATITQHSSSVS 533
L A + + + S
Sbjct: 258 LVNTRAVVLKEVQAPS 273
>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 415
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 313 IPAFSQIKASHRQSSHSKPASQPQQDHRSRLTALP 417
+P S + + Q HS PAS P +SR +LP
Sbjct: 315 LPTLSAVTSDSAQP-HSLPASMPSSQPQSRSESLP 348
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 309 HNPRILADKSKSSTVVPQQASIAASTGPSQPTHRAS 416
H P + DK+ VP +A++ + G S+P AS
Sbjct: 65 HLPLLCEDKNVPYVFVPSKAALGRACGVSRPVISAS 100
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 778 GGXISLWSYISSQNGYTVSNVYS 846
G L+S ++S NGYT N YS
Sbjct: 129 GSDKGLFSGLTSSNGYTTGNSYS 151
>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +2
Query: 269 LSDSSSAHQELRLPQSPHSRR*KQVIDSRPTASQHRSLNRTIAADSP 409
+ S + + S S + K I+ A H++ NRT DSP
Sbjct: 292 IQQSHQPYHYTNVKDSQGSHQTKVTIEENMEAPSHQAANRTTLTDSP 338
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,314,867
Number of Sequences: 5004
Number of extensions: 64272
Number of successful extensions: 251
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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