Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP18_FL5_B18
         (853 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK124538-1|BAC85878.1|  256|Homo sapiens protein ( Homo sapiens ...    32   3.0  
BX537787-1|CAD97843.1|  895|Homo sapiens hypothetical protein pr...    31   7.0  
AY365125-1|AAR13073.1|  895|Homo sapiens cullin 4B protein.            31   7.0  
AK222747-1|BAD96467.1|  203|Homo sapiens ribosomal protein L13a ...    30   9.3  

>AK124538-1|BAC85878.1|  256|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42547 fis, clone BRACE3004880. ).
          Length = 256

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = -2

Query: 558 VLLEVCGESKLSLNAA*LSPVLLEVCGESRLSLNAAR*GSV 436
           V L  CG S+++L+A  LS +    CG SR++L+A    S+
Sbjct: 151 VTLSACGLSRVTLSACGLSSMTPSACGLSRVTLSACHLSSM 191


>BX537787-1|CAD97843.1|  895|Homo sapiens hypothetical protein
           protein.
          Length = 895

 Score = 30.7 bits (66), Expect = 7.0
 Identities = 23/68 (33%), Positives = 30/68 (44%)
 Frame = +2

Query: 356 PTASQHRSLNRTIAADSPRFLALRHAPTLPHRAAFKLSLDSPQTSSSTGDNHAAFKLSFD 535
           PT     S +   AA   R     +  T P  +A K  L+S  +SSS   N    +  FD
Sbjct: 3   PTGFSSPSPSAAAAAQEVRSATDGNTSTTPPTSAKKRKLNSSSSSSSNSSNE---REDFD 59

Query: 536 SPQTSSST 559
           S  +SSST
Sbjct: 60  STSSSSST 67


>AY365125-1|AAR13073.1|  895|Homo sapiens cullin 4B protein.
          Length = 895

 Score = 30.7 bits (66), Expect = 7.0
 Identities = 23/68 (33%), Positives = 30/68 (44%)
 Frame = +2

Query: 356 PTASQHRSLNRTIAADSPRFLALRHAPTLPHRAAFKLSLDSPQTSSSTGDNHAAFKLSFD 535
           PT     S +   AA   R     +  T P  +A K  L+S  +SSS   N    +  FD
Sbjct: 3   PTGFSSPSPSAAAAAQEVRSATDGNTSTTPPTSAKKRKLNSSSSSSSNSSNE---REDFD 59

Query: 536 SPQTSSST 559
           S  +SSST
Sbjct: 60  STSSSSST 67


>AK222747-1|BAD96467.1|  203|Homo sapiens ribosomal protein L13a
           variant protein.
          Length = 203

 Score = 30.3 bits (65), Expect = 9.3
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -2

Query: 681 QASVNYLALYDGYPPHHSPPRPEVVPFLVIVVR 583
           QA++++L ++DG PP +   +  VVP  + VVR
Sbjct: 96  QAALDHLKVFDGIPPPYDKKKRMVVPAALKVVR 128


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,591,753
Number of Sequences: 237096
Number of extensions: 2435004
Number of successful extensions: 6908
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6873
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10816958492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)