Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP18_FL5_B18
         (853 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   2.7  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   3.6  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    23   4.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.2  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 357 PQQASIAASTGPSQPTHRASWPY 425
           PQ +  +AST P+  T  + +PY
Sbjct: 69  PQHSGSSASTSPAARTTSSMYPY 91


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 654 YDGYPPHHSPPRPE 613
           +D YPP   PP P+
Sbjct: 656 FDEYPPDSDPPPPD 669


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = -2

Query: 612 VVPFLVIVVRAEISLQVPVLLEVCGESKLSLNAA*LSPVLLEVCGESRLS 463
           V P+++ ++           L  CG + ++     +SP+L  VC ++RL+
Sbjct: 25  VGPYVIGLMNTMTHTTNAFCLPFCGPNVINPFFCDMSPLLSLVCADTRLN 74


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 660 ALYDGYPPHHSPPRPE 613
           A+  G+ PHH P  PE
Sbjct: 456 AIQIGHTPHHHPHPPE 471


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 312 NPRILADKSKSSTVVPQQASIAASTGPSQ 398
           NPRI +  S S++  P     AA+  PS+
Sbjct: 514 NPRIASAPSSSTSSSPPAKGAAAAGQPSK 542


>AF388659-3|AAK71993.1|  548|Apis mellifera
          1D-myo-inositol-trisphosphate 3-kinaseisoform C
          protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 94 KIIANRKQRYSETYTSRV 41
          KII +R +RYS+ ++S +
Sbjct: 15 KIIRSRSRRYSKRFSSSI 32



 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 337 ASHRQSSHSKPASQPQQDH 393
           +S R  S S   SQP QDH
Sbjct: 39  SSSRSPSPSLLTSQPHQDH 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,722
Number of Sequences: 438
Number of extensions: 4714
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)