Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP18_FL5_B16
         (831 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0062 - 3742857-3743045,3744641-3744916,3745933-3745992,374...    31   0.85 
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873...    30   2.6  
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    29   3.4  
03_05_0183 - 21681673-21682524                                         29   4.5  

>09_02_0062 -
           3742857-3743045,3744641-3744916,3745933-3745992,
           3746554-3748102,3748183-3748418
          Length = 769

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 20/42 (47%), Positives = 24/42 (57%)
 Frame = +1

Query: 571 EAKFAKRWIVHPSKGNVSWVRPS*DRLLLPY*WLVVAIVILL 696
           EA  A+   VHP+   +  VR S DRLL PY  L VA  +LL
Sbjct: 563 EAALAQAAAVHPNHPTLKIVRISEDRLLSPYKELSVANKLLL 604


>03_05_0001 - 19386264-19386284,19386446-19386517,19386614-19387357,
            19387454-19388884,19388953-19389118,19392035-19392114,
            19392393-19392462,19392550-19392761,19392837-19392890,
            19393471-19393623,19393715-19393930,19394029-19394248,
            19394332-19394399,19394510-19394643,19394755-19394854,
            19394943-19395421,19395506-19395699,19396270-19396355,
            19396364-19396444,19396842-19397023,19397305-19397346,
            19398247-19398558,19399374-19399434,19399435-19399617,
            19399744-19399863,19400380-19401051,19402597-19402668,
            19402742-19402865,19403563-19403651,19405023-19405097
          Length = 2170

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +1

Query: 502  LWQPSVHSDVAF*SFDVGSSYHCEAKFAKRWIVHPSKGNVSWVR--PS*DRL 651
            LW+  V S  A  S   G+   C+ +    W +HP   ++  VR  P  DRL
Sbjct: 1109 LWKVEVPSLTAIRSLSTGTVLGCQVEKHMNWYLHPEHVSILLVRLMPQLDRL 1160


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 445 YYKEFLARG-AXKVTTGITGLWQPSVHSDVAF*SFDVG 555
           YYK F A G   KV  GIT  + PS+  D+AF S  +G
Sbjct: 632 YYKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669


>03_05_0183 - 21681673-21682524
          Length = 283

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 509 SQAFIATLLFDPSMSALPIIAKQNSPS 589
           SQAF A LL D + +A+P++  Q  P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,021,644
Number of Sequences: 37544
Number of extensions: 428648
Number of successful extensions: 781
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)