Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP18_FL5_B15
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    29   0.67 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   1.2  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    28   2.0  
SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2...    27   4.7  
SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces p...    26   8.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   8.2  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 245 VRVHRANTGRSSNELDRQTTXLERR 319
           +R H+ + GR+  ELDR+ T L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = +2

Query: 773 PXPXAPPXXPVPPXXSAAXXXPRAXGXPPRPXRLPP 880
           P   APP   +PP  S A   P     PP P  LPP
Sbjct: 139 PPTSAPPRPSIPPP-SPASAPPIPSKAPPIPSSLPP 173



 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/36 (30%), Positives = 13/36 (36%)
 Frame = +2

Query: 773 PXPXAPPXXPVPPXXSAAXXXPRAXGXPPRPXRLPP 880
           P    PP  P  P  S           PP P ++PP
Sbjct: 168 PSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPP 203


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = -1

Query: 879 GGXRXGRGGXPXARGXXXAALXXGGTGXXGGAXG 778
           GG R GRGG    RG           G  GGA G
Sbjct: 12  GGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARG 45



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = -1

Query: 879 GGXRXGRGGXPXARGXXXAALXXGGTGXXGGAXG 778
           GG R GRGG   ARG        G +G  GGA G
Sbjct: 41  GGARGGRGGRGGARGG-----RGGSSGGRGGAKG 69


>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
 Frame = +2

Query: 401 PPPGTALSAARVSNNGS----VSCIXR 469
           PPP   + AAR SNNG+    +SC+ R
Sbjct: 157 PPPYPNVEAARASNNGAAPPDLSCVVR 183


>SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 159

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +3

Query: 6   DHSLGIASIDQLS*NVDDLYYSCYRFLLTCAIASAAECENATSL 137
           D SL +ASI  LS +   L Y+ Y+ LL  + A  + C+N  +L
Sbjct: 79  DKSL-VASIQGLSVDHRSLVYNHYKHLLEASDAINSFCKNLNTL 121


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/34 (32%), Positives = 13/34 (38%)
 Frame = +2

Query: 779  PXAPPXXPVPPXXSAAXXXPRAXGXPPRPXRLPP 880
            P APP  P P     +   P      P P  +PP
Sbjct: 1060 PSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPP 1093


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,996
Number of Sequences: 5004
Number of extensions: 43050
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)