Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP18_FL5_B14
         (873 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999...    30   2.8  
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764           29   6.4  

>01_06_0116 -
           26595570-26596607,26596964-26598353,26599386-26599923,
           26600562-26601453
          Length = 1285

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -1

Query: 477 PSQNSPPGSVLEPDHAGVLNG-DERFRHVT--TXHAWNETPCARRYYRPRTASAQ 322
           PS     GS  +   +G L+   ER RH +  T HA  E P   R  RPRT+S +
Sbjct: 451 PSAREQRGSADKSSGSGRLDALVERMRHGSKLTDHAKREIPYDERNIRPRTSSGR 505


>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
          Length = 640

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 393 TTXHAWNETPCARRYY 346
           TT  AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,096,509
Number of Sequences: 37544
Number of extensions: 409083
Number of successful extensions: 996
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)